RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 CCDC130P13994 396 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 ZNF23P17027 643 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 PEX2P28328 305 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 RPL22P35268 128 aaKnown RBP7.58□□□□□ -1.2
CLIP1-205ENST00000514271 PIK3CAP42336 1068 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 SERPINB4P48594 390 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 MRPL19P49406 292 aaKnown RBP7.58□□□□□ -1.2
CLIP1-205ENST00000514271 PDIA2Q13087 525 aaKnown RBP7.58□□□□□ -1.2
CLIP1-205ENST00000514271 THOC5Q13769 683 aaKnown RBP7.58□□□□□ -1.2
CLIP1-205ENST00000514271 NADK2Q4G0N4 442 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 SH2D4BQ5SQS7 431 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 TDRD10Q5VZ19 366 aaKnown RBP7.58□□□□□ -1.2
CLIP1-205ENST00000514271 EPGNQ6UW88 154 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 TRIM72Q6ZMU5 477 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 USP51Q70EK9 711 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 MCUQ8NE86 351 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 TIFAQ96CG3 184 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 SNX27Q96L92 541 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 FNBP1Q96RU3 617 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 TSSK1BQ9BXA7 367 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 C6orf203Q9P0P8 240 aaPredicted RBP7.58□□□□□ -1.2
CLIP1-205ENST00000514271 AGO2Q9UKV8 859 aaKnown RBP7.58□□□□□ -1.2
CLIP1-205ENST00000514271 POMPQ9Y244 141 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 TRDMT1O14717 391 aaKnown RBP7.57□□□□□ -1.2
CLIP1-205ENST00000514271 TNFRSF10BO14763 440 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 USP1O94782 785 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 LSM8O95777 96 aaKnown RBP7.57□□□□□ -1.2
CLIP1-205ENST00000514271 SRGAP2BP0DMP2 458 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 LRPAP1P30533 357 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 FDFT1P37268 417 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 MLLT3P42568 568 aaPredicted RBP7.57□□□□□ -1.2
CLIP1-205ENST00000514271 ARCN1P48444 511 aaKnown RBP7.57□□□□□ -1.2
CLIP1-205ENST00000514271 VPS41P49754 854 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 CDK9P50750 372 aaKnown RBP7.57□□□□□ -1.2
CLIP1-205ENST00000514271 TNK2Q07912 1038 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 USP4Q13107 963 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 CALCOCO2Q13137 446 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 TUSC3Q13454 348 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 TMED2Q15363 201 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 DNAL1Q4LDG9 190 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 KRT39Q6A163 491 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 KLHL35Q6PF15 583 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 CHSY3Q70JA7 882 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 SV2AQ7L0J3 742 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 C4orf33Q8N1A6 199 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 ANKRD42Q8N9B4 389 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 ZBTB8BQ8NAP8 495 aaPredicted RBP7.57□□□□□ -1.2
CLIP1-205ENST00000514271 XXYLT1Q8NBI6 393 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 BEST2Q8NFU1 509 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 SIGLEC10Q96LC7 697 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 ZNF560Q96MR9 790 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 NEURL2Q9BR09 285 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 MSTO1Q9BUK6 570 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 HERC2P3Q9BVR0 1158 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 CDHR5Q9HBB8 845 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 RAB20Q9NX57 234 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 C15orf38-AP3S2A0A0A6YYH1 394 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 A0A1B0GTW7 788 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 ZBTB14O43829 449 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 TOP3BO95985 862 aaKnown RBP7.57□□□□□ -1.2
CLIP1-205ENST00000514271 POU2F2P09086 479 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 KRT13P13646 458 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 TSPAN7P41732 249 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 RPL5P46777 297 aaKnown RBP7.57□□□□□ -1.2
CLIP1-205ENST00000514271 MFAP3P55082 362 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 SH3BGRP55822 239 aaPredicted RBP7.57□□□□□ -1.2
CLIP1-205ENST00000514271 YWHAZP63104 245 aaKnown RBP7.57□□□□□ -1.2
CLIP1-205ENST00000514271 TUBA4AP68366 448 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 STX3Q13277 289 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 PDK3Q15120 406 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 SNRNP35Q16560 246 aaKnown RBP7.57□□□□□ -1.2
CLIP1-205ENST00000514271 TFDP3Q5H9I0 405 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 NHSL2Q5HYW2 709 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 HABP4Q5JVS0 413 aaKnown RBP7.57□□□□□ -1.2
CLIP1-205ENST00000514271 SLC9A4Q6AI14 798 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 ALKAL1Q6UXT8 129 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 ARPINQ7Z6K5 226 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 CBWD2Q8IUF1 395 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 ERI1Q8IV48 349 aaKnown RBP7.57□□□□□ -1.2
CLIP1-205ENST00000514271 SMG8Q8ND04 991 aaKnown RBP7.57□□□□□ -1.2
CLIP1-205ENST00000514271 HSPH1Q92598 858 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 LRGUKQ96M69 825 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 CASD1Q96PB1 797 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 PSD2Q9BQI7 771 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 EBF4Q9BQW3 602 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 RHOBTB2Q9BYZ6 727 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 TRIM4Q9C037 500 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 MINDY3Q9H8M7 445 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 NKIRAS1Q9NYS0 192 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 CD300AQ9UGN4 299 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 EVLQ9UI08 416 aaPredicted RBP7.57□□□□□ -1.2
CLIP1-205ENST00000514271 CPSF3Q9UKF6 684 aaKnown RBP7.57□□□□□ -1.2
CLIP1-205ENST00000514271 ANGPTL2Q9UKU9 493 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 DSEQ9UL01 958 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 MIA3Q5JRA6 1907 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 EXOC1LA0A1B0GW35 172 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 SFI1A8K8P3 1242 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 PRR5-ARHGAP8B1AHC4 643 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 LPXNO60711 386 aa7.57□□□□□ -1.2
CLIP1-205ENST00000514271 THP07101 528 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms