RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ANKRD62A6NC57 917 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 EYA2O00167 538 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 LDB2O43679 373 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 TAF5LO75529 589 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 TMCC1O94876 653 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 SOX30O94993 753 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 NDST3O95803 873 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 ENO3P13929 434 aaPredicted RBP3.08□□□□□ -1.92
NUP54-208ENST00000508604 GABRB3P28472 473 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 PIK3CBP42338 1070 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 OAZ1P54368 228 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 GBX1Q14549 363 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 ZNF284Q2VY69 593 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 FAM171A1Q5VUB5 890 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 FBXO38Q6PIJ6 1188 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 TXLNBQ8N3L3 684 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 CTCFLQ8NI51 663 aaPredicted RBP3.08□□□□□ -1.92
NUP54-208ENST00000508604 TMEM163Q8TC26 289 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 WDR60Q8WVS4 1066 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 DUX3Q96PT4 197 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 SORBS1Q9BX66 1292 aaKnown RBP3.08□□□□□ -1.92
NUP54-208ENST00000508604 HIPK3Q9H422 1215 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 ARL15Q9NXU5 204 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 AGO1Q9UL18 857 aaKnown RBP3.08□□□□□ -1.92
NUP54-208ENST00000508604 RAB21Q9UL25 225 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 MAN2B2Q9Y2E5 1009 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 IGLV5-37A0A075B6J1 123 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 VSTM5A8MXK1 200 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 APOL1O14791 398 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 LDLRP01130 860 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 HLA-DQA2P01906 255 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 CYP3A4P08684 503 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 UNGP13051 313 aaPredicted RBP3.08□□□□□ -1.92
NUP54-208ENST00000508604 CRIP2P52943 208 aaPredicted RBP3.08□□□□□ -1.92
NUP54-208ENST00000508604 RPL15P61313 204 aaKnown RBP3.08□□□□□ -1.92
NUP54-208ENST00000508604 ERVK11-1P61568 191 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 RHAGQ02094 409 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 ZNF543Q08ER8 600 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 GFOD2Q3B7J2 385 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 GDPD4Q6W3E5 623 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 TRMT1LQ7Z2T5 733 aaKnown RBP3.08□□□□□ -1.92
NUP54-208ENST00000508604 NAGSQ8N159 534 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 TMEM217Q8N7C4 229 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 ANKRD44Q8N8A2 993 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 FBXO17Q96EF6 278 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 TXNDC15Q96J42 360 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 CCDC134Q9H6E4 229 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 FSCN3Q9NQT6 498 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 ZDHHC7Q9NXF8 308 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 PCDHAC2Q9Y5I4 1007 aa3.08□□□□□ -1.92
NUP54-208ENST00000508604 LOC105369274A0A096LPK9 316 aa3.07□□□□□ -1.92
NUP54-208ENST00000508604 LOC102723532A0A0G2JNH3 316 aa3.07□□□□□ -1.92
NUP54-208ENST00000508604 C17orf102A2RUQ5 167 aa3.07□□□□□ -1.92
NUP54-208ENST00000508604 DHHO43323 396 aa3.07□□□□□ -1.92
NUP54-208ENST00000508604 PQBP1O60828 265 aaKnown RBP3.07□□□□□ -1.92
NUP54-208ENST00000508604 IGSF3O75054 1194 aa3.07□□□□□ -1.92
NUP54-208ENST00000508604 CER1O95813 267 aa3.07□□□□□ -1.92
NUP54-208ENST00000508604 GLP2RO95838 553 aa3.07□□□□□ -1.92
NUP54-208ENST00000508604 MMP3P08254 477 aa3.07□□□□□ -1.92
NUP54-208ENST00000508604 PLK5Q496M5 336 aa3.07□□□□□ -1.92
NUP54-208ENST00000508604 VWA5B1Q5TIE3 1220 aa3.07□□□□□ -1.92
NUP54-208ENST00000508604 TRABD2AQ86V40 505 aa3.07□□□□□ -1.92
NUP54-208ENST00000508604 TMEM200AQ86VY9 491 aa3.07□□□□□ -1.92
NUP54-208ENST00000508604 OR4N4Q8N0Y3 316 aa3.07□□□□□ -1.92
NUP54-208ENST00000508604 CD101Q93033 1021 aa3.07□□□□□ -1.92
NUP54-208ENST00000508604 BICD1Q96G01 975 aa3.07□□□□□ -1.92
NUP54-208ENST00000508604 COLEC11Q9BWP8 271 aa3.07□□□□□ -1.92
NUP54-208ENST00000508604 TCEAL9Q9UHQ7 104 aa3.07□□□□□ -1.92
NUP54-208ENST00000508604 TRPC5Q9UL62 973 aaPredicted RBP3.07□□□□□ -1.92
NUP54-208ENST00000508604 A0A1W2PPC4 97 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 TCRBV7S3A2A0A539 114 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 MAGEA13PA6NCF6 341 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 TMEM247A6NEH6 219 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 M0QYT0 321 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 KPNA5O15131 536 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 RNF224P0DH78 156 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 THPOP40225 353 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 GLIPR1P48060 266 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 FOXL2P58012 376 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 RBM6P78332 1123 aaKnown RBP3.06□□□□□ -1.92
NUP54-208ENST00000508604 PHEXP78562 749 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 RNASELQ05823 741 aaKnown RBP3.06□□□□□ -1.92
NUP54-208ENST00000508604 DMP1Q13316 513 aaPredicted RBP3.06□□□□□ -1.92
NUP54-208ENST00000508604 NFE2Q16621 373 aaPredicted RBP3.06□□□□□ -1.92
NUP54-208ENST00000508604 ARL13BQ3SXY8 428 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 C5orf22Q49AR2 442 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 LCE1FQ5T754 118 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 PLEKHA7Q6IQ23 1121 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 SLC30A9Q6PML9 568 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 C9orf139Q6ZV77 190 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 DGKHQ86XP1 1220 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 GLIS1Q8NBF1 620 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 FEM1CQ96JP0 617 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 CDH22Q9UJ99 828 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 SLC25A13Q9UJS0 675 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 CNTN6Q9UQ52 1028 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 DTNAQ9Y4J8 743 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 COPG1Q9Y678 874 aaKnown RBP3.06□□□□□ -1.92
NUP54-208ENST00000508604 NFS1Q9Y697 457 aa3.06□□□□□ -1.92
NUP54-208ENST00000508604 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms