RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 CIB1Q99828 191 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 ELOVL4Q9GZR5 314 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 C20orf96Q9NUD7 363 aaPredicted RBP17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 PIH1D1Q9NWS0 290 aaKnown RBP17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 DOLKQ9UPQ8 538 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 PCDHGA7Q9Y5G6 932 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 TMX2-CTNND1H3BSU7 103 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 GRAP2O75791 330 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 OCM2P0CE71 109 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 OCMP0CE72 109 aaPredicted RBP17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 HOXD12P35452 270 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 NR2C2P49116 596 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 IRF9Q00978 393 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 CAPSQ13938 189 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 HEATR6Q6AI08 1181 aaKnown RBP17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 HMBOX1Q6NT76 420 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 PTAR1Q7Z6K3 402 aaPredicted RBP17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 DDHD1Q8NEL9 900 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 ZNF420Q8TAQ5 688 aaPredicted RBP17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 FAM151AQ8WW52 585 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 ITPKCQ96DU7 683 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 MOCOSQ96EN8 888 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 CERS2Q96G23 380 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 NEURL2Q9BR09 285 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 CORO1BQ9BR76 489 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 TCHPQ9BT92 498 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 PCDHAC1Q9H158 963 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 NMRAL1Q9HBL8 299 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 CDYLQ9Y232 598 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 SNX13Q9Y5W8 968 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 COPG1Q9Y678 874 aaKnown RBP17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 MYO18AQ92614 2054 aaKnown RBP17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 A0A096LPK6 155 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 TCRBV3S1A0A5B6 114 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 DPYSL4O14531 572 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 OGTO15294 1046 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 ADAM23O75077 832 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 E2F6O75461 281 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 FUCA1P04066 466 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 MPOP05164 745 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 HSPA1AP0DMV8 641 aaKnown RBP17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 HSPA1BP0DMV9 641 aaKnown RBP17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 MCF2P10911 925 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 RPL10P27635 214 aaKnown RBP17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 SLC7A1P30825 629 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 LIMK2P53671 638 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 OR6B2Q6IFH4 312 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 PPP4R4Q6NUP7 873 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 DEFB132Q7Z7B7 95 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 TTC30AQ86WT1 665 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 HERC6Q8IVU3 1022 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 SLC15A3Q8IY34 581 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 CPNE9Q8IYJ1 553 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 THAP11Q96EK4 314 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 RPF2Q9H7B2 306 aaKnown RBP17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 NGRNQ9NPE2 291 aaKnown RBP17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 ANLNQ9NQW6 1124 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 EIF2B3Q9NR50 452 aaKnown RBP17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 SYBUQ9NX95 663 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 ADA2Q9NZK5 511 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 VTI1BQ9UEU0 232 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 A0A0A0MRY4 1105 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 HTR3EA5X5Y0 456 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 TRIM64BA6NI03 449 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 PIK3R2O00459 728 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 MSCO60682 206 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 CLASP2O75122 1294 aaKnown RBP17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 SUPT20HL2P0C7V6 817 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 SPRP35270 261 aaPredicted RBP17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 C21orf59P57076 290 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 PSME3P61289 254 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 KCNC4Q03721 635 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 SUPT20HL1Q3ZLR7 823 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 ARL13AQ5H913 290 aaPredicted RBP17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 FSTL4Q6MZW2 842 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 NANOGP8Q6NSW7 305 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 CENPSQ8N2Z9 138 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 UBA3Q8TBC4 463 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 TMEM176AQ96HP8 235 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 SPATA13Q96N96 652 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 MRPL40Q9NQ50 206 aaKnown RBP17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 ZDHHC2Q9UIJ5 367 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 MGAMO43451 1857 aa17.4■□□□□ 0.38
SQSTM1-211ENST00000506690 H3BMQ9 156 aa17.39■□□□□ 0.37
SQSTM1-211ENST00000506690 CILPO75339 1184 aa17.39■□□□□ 0.37
SQSTM1-211ENST00000506690 PIGNO95427 931 aa17.39■□□□□ 0.37
SQSTM1-211ENST00000506690 JUNP05412 331 aaKnown RBP17.39■□□□□ 0.37
SQSTM1-211ENST00000506690 CCR10P46092 362 aa17.39■□□□□ 0.37
SQSTM1-211ENST00000506690 TRAP1Q12931 704 aaKnown RBP17.39■□□□□ 0.37
SQSTM1-211ENST00000506690 PRKAA1Q13131 559 aa17.39■□□□□ 0.37
SQSTM1-211ENST00000506690 ITGA7Q13683 1181 aa17.39■□□□□ 0.37
SQSTM1-211ENST00000506690 ZNF667Q5HYK9 610 aa17.39■□□□□ 0.37
SQSTM1-211ENST00000506690 ANKFN1Q8N957 763 aa17.39■□□□□ 0.37
SQSTM1-211ENST00000506690 CHPT1Q8WUD6 406 aa17.39■□□□□ 0.37
SQSTM1-211ENST00000506690 MARK4Q96L34 752 aa17.39■□□□□ 0.37
SQSTM1-211ENST00000506690 COG8Q96MW5 612 aa17.39■□□□□ 0.37
SQSTM1-211ENST00000506690 BRD8Q9H0E9 1235 aa17.39■□□□□ 0.37
SQSTM1-211ENST00000506690 TUT1Q9H6E5 874 aaKnown RBP17.39■□□□□ 0.37
SQSTM1-211ENST00000506690 NOL11Q9H8H0 719 aaKnown RBP17.39■□□□□ 0.37
SQSTM1-211ENST00000506690 FADS3Q9Y5Q0 445 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms