RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 PLCB1Q9NQ66 1216 aa13□□□□□ -0.33
SKA1-205ENST00000494518 ARHGAP20Q9P2F6 1191 aa13□□□□□ -0.33
SKA1-205ENST00000494518 DKK4Q9UBT3 224 aa13□□□□□ -0.33
SKA1-205ENST00000494518 VPS28Q9UK41 221 aa13□□□□□ -0.33
SKA1-205ENST00000494518 HS3ST4Q9Y661 456 aa13□□□□□ -0.33
SKA1-205ENST00000494518 LATO43561 262 aa12.99□□□□□ -0.33
SKA1-205ENST00000494518 PLRG1O43660 514 aaKnown RBP12.99□□□□□ -0.33
SKA1-205ENST00000494518 SNAP91O60641 907 aa12.99□□□□□ -0.33
SKA1-205ENST00000494518 PAGE1O75459 146 aa12.99□□□□□ -0.33
SKA1-205ENST00000494518 CNTN5O94779 1100 aa12.99□□□□□ -0.33
SKA1-205ENST00000494518 ERBB2P04626 1255 aa12.99□□□□□ -0.33
SKA1-205ENST00000494518 PRLRP16471 622 aa12.99□□□□□ -0.33
SKA1-205ENST00000494518 ITPKBP27987 946 aa12.99□□□□□ -0.33
SKA1-205ENST00000494518 HNF1BP35680 557 aa12.99□□□□□ -0.33
SKA1-205ENST00000494518 SULT2A1Q06520 285 aa12.99□□□□□ -0.33
SKA1-205ENST00000494518 TARDBPQ13148 414 aaKnown RBP eCLIP12.99□□□□□ -0.33
SKA1-205ENST00000494518 SLC12A1Q13621 1099 aa12.99□□□□□ -0.33
SKA1-205ENST00000494518 MEA1Q16626 185 aa12.99□□□□□ -0.33
SKA1-205ENST00000494518 TTC39BQ5VTQ0 682 aaPredicted RBP12.99□□□□□ -0.33
SKA1-205ENST00000494518 DSG4Q86SJ6 1040 aa12.99□□□□□ -0.33
SKA1-205ENST00000494518 FEM1AQ9BSK4 669 aa12.99□□□□□ -0.33
SKA1-205ENST00000494518 MUC3BQ9H195 1237 aa12.99□□□□□ -0.33
SKA1-205ENST00000494518 FZD3Q9NPG1 666 aa12.99□□□□□ -0.33
SKA1-205ENST00000494518 AK5Q9Y6K8 562 aa12.99□□□□□ -0.33
SKA1-205ENST00000494518 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.98□□□□□ -0.33
SKA1-205ENST00000494518 C1QTNF3-AMACRE9PGA6 284 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 K7ERQ8 282 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 M0QYT0 321 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 RNF103O00237 685 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 SLC31A1O15431 190 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 YKT6O15498 198 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 TLX3O43711 291 aaPredicted RBP12.98□□□□□ -0.33
SKA1-205ENST00000494518 ATP9BO43861 1147 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 HSF2BPO75031 334 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 DAB1O75553 588 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 MT-CO1P00395 513 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 CTSLP07711 333 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 SLC2A3P11169 496 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 TFE3P19532 575 aaPredicted RBP12.98□□□□□ -0.33
SKA1-205ENST00000494518 PLK1P53350 603 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 RNASE9P60153 205 aaKnown RBP12.98□□□□□ -0.33
SKA1-205ENST00000494518 ZNF177Q13360 481 aaPredicted RBP12.98□□□□□ -0.33
SKA1-205ENST00000494518 BECN1Q14457 450 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 STAT4Q14765 748 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 PTPN20Q4JDL3 420 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 EFHC1Q5JVL4 640 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 C6orf118Q5T5N4 469 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 OTUD1Q5VV17 481 aaPredicted RBP12.98□□□□□ -0.33
SKA1-205ENST00000494518 FAM46CQ5VWP2 391 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 FOXR2Q6PJQ5 311 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 OLFML1Q6UWY5 402 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 GBP6Q6ZN66 633 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 C11orf57Q6ZUT1 292 aaPredicted RBP12.98□□□□□ -0.33
SKA1-205ENST00000494518 ENOSF1Q7L5Y1 443 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 KANSL1Q7Z3B3 1105 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 ELOA2Q8IYF1 753 aaPredicted RBP12.98□□□□□ -0.33
SKA1-205ENST00000494518 SH2D3CQ8N5H7 860 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 MFSD2AQ8NA29 543 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 NXPE2Q96DL1 559 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 SYNCQ9H7C4 482 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 ANLNQ9NQW6 1124 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 TMPRSS4Q9NRS4 437 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 APEX2Q9UBZ4 518 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 PCDHGA1Q9Y5H4 931 aa12.98□□□□□ -0.33
SKA1-205ENST00000494518 MGAQ8IWI9 3026 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 KALRNO60229 2985 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 KIF26BQ2KJY2 2108 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 A0A087WV48 116 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 A0A1W2PQU0 124 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 KPNA3O00505 521 aaPredicted RBP12.97□□□□□ -0.33
SKA1-205ENST00000494518 RNGTTO60942 597 aaKnown RBP12.97□□□□□ -0.33
SKA1-205ENST00000494518 ENDOD1O94919 500 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 ADCY5O95622 1261 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 FGFR1OPO95684 399 aaKnown RBP12.97□□□□□ -0.33
SKA1-205ENST00000494518 RHOCP08134 193 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 GLI1P08151 1106 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 SRCP12931 536 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 RRM1P23921 792 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 ABCG1P45844 678 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 RXRGP48443 463 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 SULT1E1P49888 294 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 OXCT1P55809 520 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 TAS2R38P59533 333 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 CAMK4Q16566 473 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 EXOC3L4Q17RC7 722 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 SETMARQ53H47 684 aaPredicted RBP12.97□□□□□ -0.33
SKA1-205ENST00000494518 ALFQ53S48 1182 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 SFMBT2Q5VUG0 894 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 FBXL19Q6PCT2 694 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 LINGO4Q6UY18 593 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 TFAP2DQ7Z6R9 452 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 OXR1Q8N573 874 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 ATP11CQ8NB49 1132 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 CHST14Q8NCH0 376 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 SHC3Q92529 594 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 TSC1Q92574 1164 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 FAM131CQ96AQ9 280 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 ARRDC3Q96B67 414 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 PSMB7Q99436 277 aa12.97□□□□□ -0.33
SKA1-205ENST00000494518 PIGVQ9NUD9 493 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms