RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 FZD3Q9NPG1 666 aa14.36□□□□□ -0.11
VARS-227ENST00000489979 ARMCX3Q9UH62 379 aaPredicted RBP14.36□□□□□ -0.11
VARS-227ENST00000489979 SLC25A13Q9UJS0 675 aa14.36□□□□□ -0.11
VARS-227ENST00000489979 LY6G6EA0A0G2JKS1 128 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 A0A1W2PQU0 124 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 KCNU1A8MYU2 1149 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 B8ZZF3 427 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 MCF2LO15068 1137 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 BNIP3LO60238 219 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 TRUB2O95900 331 aaKnown RBP14.35□□□□□ -0.11
VARS-227ENST00000489979 IGLV3-25P01717 112 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 ALPPL2P10696 532 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 C6P13671 934 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 PRCPP42785 496 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 GPD2P43304 727 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 RPL34P49207 117 aaKnown RBP14.35□□□□□ -0.11
VARS-227ENST00000489979 FMO5P49326 533 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 PMS1P54277 932 aaKnown RBP14.35□□□□□ -0.11
VARS-227ENST00000489979 PITX1P78337 314 aaPredicted RBP14.35□□□□□ -0.11
VARS-227ENST00000489979 FKBP3Q00688 224 aaKnown RBP14.35□□□□□ -0.11
VARS-227ENST00000489979 VAC14Q08AM6 782 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 PIP5KL1Q5T9C9 394 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 ANKRD40Q6AI12 368 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 BEND5Q7L4P6 421 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 ATP6V0D2Q8N8Y2 350 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 OR13H1Q8NG92 308 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 ERCC4Q92889 916 aaPredicted RBP14.35□□□□□ -0.11
VARS-227ENST00000489979 ALG14Q96F25 216 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 PRMT1Q99873 361 aaKnown RBP14.35□□□□□ -0.11
VARS-227ENST00000489979 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.35□□□□□ -0.11
VARS-227ENST00000489979 CALN1Q9BXU9 219 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 DPH1Q9BZG8 443 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 ABCG4Q9H172 646 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 GOLPH3LQ9H4A5 285 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 ASCL3Q9NQ33 180 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 NLGN3Q9NZ94 848 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 U3KQA8 63 aa14.35□□□□□ -0.11
VARS-227ENST00000489979 TCAF2A6NFQ2 919 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 ALOX15BO15296 676 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 GP1BAP07359 652 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 AKT2P31751 481 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 ACADSBP45954 432 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 DUSP3P51452 185 aaPredicted RBP14.34□□□□□ -0.11
VARS-227ENST00000489979 OXCT1P55809 520 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 CLDN2P57739 230 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 ZNF284Q2VY69 593 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 RABGAP1LQ5R372 815 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 TTC39BQ5VTQ0 682 aaPredicted RBP14.34□□□□□ -0.11
VARS-227ENST00000489979 RRAGAQ7L523 313 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 HORMAD1Q86X24 394 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 SLC22A18ASQ8N1D0 253 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 OR52K2Q8NGK3 314 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 MAPK15Q8TD08 544 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 NOX5Q96PH1 765 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 FEM1AQ9BSK4 669 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 TRIM62Q9BVG3 475 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 CLMPQ9H6B4 373 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 POPDC2Q9HBU9 364 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 THSD1Q9NS62 852 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.34□□□□□ -0.11
VARS-227ENST00000489979 SLC12A6Q9UHW9 1150 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 TRPM6Q9BX84 2022 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 PIEZO2Q9H5I5 2752 aa14.34□□□□□ -0.11
VARS-227ENST00000489979 KIF26BQ2KJY2 2108 aa14.33□□□□□ -0.11
VARS-227ENST00000489979 TRIM49BA6NDI0 452 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 NEMP2A6NFY4 417 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 K7ESM1 405 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 NEBLO76041 1014 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 ZNF202O95125 648 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 CTSLP07711 333 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 HNRNPA2B1P22626 353 aaKnown RBP14.33□□□□□ -0.12
VARS-227ENST00000489979 KRT85P78386 507 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 CENPCQ03188 943 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 KCNC4Q03721 635 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 EIF4EBP2Q13542 120 aaPredicted RBP14.33□□□□□ -0.12
VARS-227ENST00000489979 ZNF542PQ5EBM4 170 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 C3orf38Q5JPI3 329 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 FBXL22Q6P050 247 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 NEK5Q6P3R8 708 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 DENND1BQ6P3S1 775 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 GCNT7Q6ZNI0 430 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 HSCBQ8IWL3 235 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 SH2D3CQ8N5H7 860 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 IFI44Q8TCB0 444 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 SNRNP27Q8WVK2 155 aaKnown RBP14.33□□□□□ -0.12
VARS-227ENST00000489979 ARRDC3Q96B67 414 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 RPRD1AQ96P16 312 aaPredicted RBP14.33□□□□□ -0.12
VARS-227ENST00000489979 PPP1R9BQ96SB3 815 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 DUSP23Q9BVJ7 150 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 SLC4A5Q9BY07 1137 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 DNAJC28Q9NX36 388 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 SATB2Q9UPW6 733 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 HECTD1Q9ULT8 2610 aa14.33□□□□□ -0.12
VARS-227ENST00000489979 COL27A1Q8IZC6 1860 aaPredicted RBP14.32□□□□□ -0.12
VARS-227ENST00000489979 SYNJ2BP-COX16A0A087WUM0 186 aa14.32□□□□□ -0.12
VARS-227ENST00000489979 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.32□□□□□ -0.12
VARS-227ENST00000489979 A0A1W2PNU3 283 aaPredicted RBP14.32□□□□□ -0.12
VARS-227ENST00000489979 E5RJQ4 531 aa14.32□□□□□ -0.12
VARS-227ENST00000489979 KPNA3O00505 521 aaPredicted RBP14.32□□□□□ -0.12
VARS-227ENST00000489979 SCAMP1O15126 338 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms