RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 ARHGAP12Q8IWW6 846 aa11.31□□□□□ -0.6
UBE4B-210ENST00000488228 UMODL1-AS1Q8N2C9 162 aa11.31□□□□□ -0.6
UBE4B-210ENST00000488228 PRSS33Q8NF86 280 aa11.31□□□□□ -0.6
UBE4B-210ENST00000488228 TSTD1Q8NFU3 115 aa11.31□□□□□ -0.6
UBE4B-210ENST00000488228 KIAA1524Q8TCG1 905 aa11.31□□□□□ -0.6
UBE4B-210ENST00000488228 ARHGEF2Q92974 986 aaKnown RBP11.31□□□□□ -0.6
UBE4B-210ENST00000488228 RNF25Q96BH1 459 aaPredicted RBP11.31□□□□□ -0.6
UBE4B-210ENST00000488228 PPP1R9BQ96SB3 815 aa11.31□□□□□ -0.6
UBE4B-210ENST00000488228 GABRG3Q99928 467 aa11.31□□□□□ -0.6
UBE4B-210ENST00000488228 C2orf49Q9BVC5 232 aaPredicted RBP11.31□□□□□ -0.6
UBE4B-210ENST00000488228 RCOR3Q9P2K3 495 aaPredicted RBP11.31□□□□□ -0.6
UBE4B-210ENST00000488228 SLCO3A1Q9UIG8 710 aa11.31□□□□□ -0.6
UBE4B-210ENST00000488228 SLC25A13Q9UJS0 675 aa11.31□□□□□ -0.6
UBE4B-210ENST00000488228 PACSIN2Q9UNF0 486 aaPredicted RBP11.31□□□□□ -0.6
UBE4B-210ENST00000488228 SLC8A2Q9UPR5 921 aa11.31□□□□□ -0.6
UBE4B-210ENST00000488228 ACTL7AQ9Y615 435 aa11.31□□□□□ -0.6
UBE4B-210ENST00000488228 TTC34A8MYJ7 566 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 K7ERQ8 282 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 DFFAO00273 331 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 TIMM44O43615 452 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 ZMPSTE24O75844 475 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 MAP3K6O95382 1288 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 MT-CO1P00395 513 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 EPHX1P07099 455 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 TDGF1P13385 188 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 KDELR1P24390 212 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 CTNNA1P35221 906 aaKnown RBP11.3□□□□□ -0.6
UBE4B-210ENST00000488228 ST8SIA6P61647 398 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 CSTF1Q05048 431 aaKnown RBP11.3□□□□□ -0.6
UBE4B-210ENST00000488228 SULT2A1Q06520 285 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 ENPP2Q13822 863 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 STARD3Q14849 445 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 POLD3Q15054 466 aaPredicted RBP11.3□□□□□ -0.6
UBE4B-210ENST00000488228 PDK2Q15119 407 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 CRY1Q16526 586 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 PARP15Q460N3 678 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 ANKRD20A8PQ5CZ79 823 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 AFMIDQ63HM1 303 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 NCBP2-AS2Q69YL0 99 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 ANO7Q6IWH7 933 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 MFSD7Q6UXD7 560 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 ARHGAP36Q6ZRI8 547 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 PEX26Q7Z412 305 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 NT5DC3Q86UY8 548 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 CCDC50Q8IVM0 306 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 KATNAL2Q8IYT4 538 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 PQLC3Q8N755 202 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 PCDH19Q8TAB3 1148 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 KCNV2Q8TDN2 545 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 HMGB4Q8WW32 186 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 FAF2Q96CS3 445 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 ACE2Q9BYF1 805 aaPredicted RBP11.3□□□□□ -0.6
UBE4B-210ENST00000488228 SLC39A8Q9C0K1 460 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 SLC6A17Q9H1V8 727 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 MAGEH1Q9H213 219 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 TMEM245Q9H330 911 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 LRRC19Q9H756 370 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 CD248Q9HCU0 757 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 DDX56Q9NY93 547 aaKnown RBP11.3□□□□□ -0.6
UBE4B-210ENST00000488228 PYCARDQ9ULZ3 195 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 PLA2G4CQ9UP65 541 aa11.3□□□□□ -0.6
UBE4B-210ENST00000488228 TNRC6BQ9UPQ9 1833 aaKnown RBP11.3□□□□□ -0.6
UBE4B-210ENST00000488228 THADAQ6YHU6 1953 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 USP27XA6NNY8 438 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 NPC1O15118 1278 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 SMAD6O43541 496 aaKnown RBP11.29□□□□□ -0.6
UBE4B-210ENST00000488228 PAPSS2O95340 614 aaPredicted RBP11.29□□□□□ -0.6
UBE4B-210ENST00000488228 APBB3O95704 486 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 SRPRAP08240 638 aaKnown RBP11.29□□□□□ -0.6
UBE4B-210ENST00000488228 SRCP12931 536 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 CTNNA2P26232 953 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 ETFBP38117 255 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 SERPINH1P50454 418 aaKnown RBP11.29□□□□□ -0.6
UBE4B-210ENST00000488228 DGKEP52429 567 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 DYNLT1P63172 113 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 SERINC3Q13530 473 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 ODF2Q5BJF6 829 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 SDE2Q6IQ49 451 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 C22orf39Q6P5X5 142 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 SPOCD1Q6ZMY3 1216 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 Q6ZVU0 165 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 MAP7D3Q8IWC1 876 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 SYCE1Q8N0S2 351 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 SH2D3CQ8N5H7 860 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 MDGA1Q8NFP4 955 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 ALG3Q92685 438 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 CALR3Q96L12 384 aaKnown RBP11.29□□□□□ -0.6
UBE4B-210ENST00000488228 RETREG1Q9H6L5 497 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 RAPGEFL1Q9UHV5 662 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 HS3ST2Q9Y278 367 aa11.29□□□□□ -0.6
UBE4B-210ENST00000488228 FCF1Q9Y324 198 aaKnown RBP11.29□□□□□ -0.6
UBE4B-210ENST00000488228 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.29□□□□□ -0.6
UBE4B-210ENST00000488228 TP53BP1Q12888 1972 aaPredicted RBP11.28□□□□□ -0.6
UBE4B-210ENST00000488228 BNIP3LO60238 219 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 SYNCRIPO60506 623 aaKnown RBP11.28□□□□□ -0.6
UBE4B-210ENST00000488228 SIN3BO75182 1162 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 SP9P0CG40 484 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 KRT10P13645 584 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 GABRG2P18507 467 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 NDUFV2P19404 249 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms