RNA–Protein interactions for RNA: ENST00000486828.6

PDLIM7-207, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-207ENST00000486828 MCMBPQ9BTE3 642 aa18.33■□□□□ 0.53
PDLIM7-207ENST00000486828 CHRAC1Q9NRG0 131 aa18.33■□□□□ 0.53
PDLIM7-207ENST00000486828 C20orf96Q9NUD7 363 aaPredicted RBP18.33■□□□□ 0.53
PDLIM7-207ENST00000486828 ZNF358Q9NW07 568 aa18.33■□□□□ 0.53
PDLIM7-207ENST00000486828 PRR5-ARHGAP8B1AHC4 643 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 ALOX15P16050 662 aaPredicted RBP18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 AOC1P19801 751 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 PAX3P23760 479 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 CCNCP24863 283 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 CTGFP29279 349 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 GMPRP36959 345 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 THPOP40225 353 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 CLNS1AP54105 237 aaKnown RBP18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 ARHGAP8P85298 464 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 GRIK3Q13003 919 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 DSC3Q14574 896 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 MAPRE1Q15691 268 aaKnown RBP18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 ACSBG2Q5FVE4 666 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 ATG14Q6ZNE5 492 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 CLEC14AQ86T13 490 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 LINC00523Q86TU6 105 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 LRRTM3Q86VH5 581 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 PLD6Q8N2A8 252 aaKnown RBP18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 CNTD1Q8N815 330 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 MAB21L3Q8N8X9 362 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 RBM15BQ8NDT2 890 aaKnown RBP18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 OR10T2Q8NGX3 314 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 TMEM209Q96SK2 561 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 SPC25Q9HBM1 224 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 DNAJC28Q9NX36 388 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 WBP1LQ9NX94 342 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 UBP1Q9NZI7 540 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 LRRC42Q9Y546 428 aa18.33■□□□□ 0.52
PDLIM7-207ENST00000486828 A0A096LPK6 155 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 A0A0U1RQF3 1178 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 E2F8A0AVK6 867 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 IRAK2O43187 625 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 SRGAP2BP0DMP2 458 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 TPH1P17752 444 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 ARRB2P32121 409 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 PTDSS1P48651 473 aaKnown RBP18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 KDSRQ06136 332 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 TUSC3Q13454 348 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 UBAP2LQ14157 1087 aaKnown RBP18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 TAF11Q15544 211 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 BRMS1LQ5PSV4 323 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 RABGAP1LQ5R372 815 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 RWDD4Q6NW29 188 aaKnown RBP18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 FBXO27Q8NI29 283 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 HASPINQ8TF76 798 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 WDR60Q8WVS4 1066 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 RSPH1Q8WYR4 309 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 HAPLN3Q96S86 360 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 MAGED2Q9UNF1 606 aaPredicted RBP18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 PLA2G4CQ9UP65 541 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 APOBEC2Q9Y235 224 aaKnown RBP18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 SHROOM3Q8TF72 1996 aa18.32■□□□□ 0.52
PDLIM7-207ENST00000486828 ITGA9Q13797 1035 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 DNAL1Q4LDG9 190 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 OVOS1Q6IE37 1185 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 OTOP3Q7RTS5 596 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 MAVSQ7Z434 540 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 THEM5Q8N1Q8 247 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 SCAMP5Q8TAC9 235 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 URGCPQ8TCY9 931 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 UROC1Q96N76 676 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 KIFC1Q9BW19 673 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 C1orf21Q9H246 121 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 CXorf56Q9H5V9 222 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 IARS2Q9NSE4 1012 aaKnown RBP18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 ABCC13Q9NSE7 274 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 PNPOQ9NVS9 261 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 STOML1Q9UBI4 398 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 AAR2Q9Y312 384 aaKnown RBP18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 PATJQ8NI35 1801 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 DFFAO00273 331 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 KLHL2O95198 593 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 F7P08709 466 aaPredicted RBP18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 NMBRP28336 390 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 HOXC13P31276 330 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 HTR7P34969 479 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 GCKP35557 465 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 HADHAP40939 763 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 NKX3-2P78367 333 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 RCN1Q15293 331 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 MFSD14CQ5VZR4 134 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 PDPK2PQ6A1A2 396 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 ARHGAP12Q8IWW6 846 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 ATPAF2Q8N5M1 289 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 USP33Q8TEY7 942 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 VPS39Q96JC1 886 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 SIK2Q9H0K1 926 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 CAB39LQ9H9S4 337 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 NSMCE4AQ9NXX6 385 aa18.31■□□□□ 0.52
PDLIM7-207ENST00000486828 G3V2L1 256 aa18.3■□□□□ 0.52
PDLIM7-207ENST00000486828 KRT36O76013 467 aa18.3■□□□□ 0.52
PDLIM7-207ENST00000486828 PSMG1O95456 288 aa18.3■□□□□ 0.52
PDLIM7-207ENST00000486828 C2P06681 752 aa18.3■□□□□ 0.52
PDLIM7-207ENST00000486828 MYL4P12829 197 aa18.3■□□□□ 0.52
PDLIM7-207ENST00000486828 ABCG1P45844 678 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms