RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 DUSP15Q9H1R2 295 aaPredicted RBP15.12■□□□□ 0.01
USP4-212ENST00000486549 UVRAGQ9P2Y5 699 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 MBD1Q9UIS9 605 aaPredicted RBP15.12■□□□□ 0.01
USP4-212ENST00000486549 PCDHGA5Q9Y5G8 931 aa15.12■□□□□ 0.01
USP4-212ENST00000486549 FRYLO94915 3013 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 CHD5Q8TDI0 1954 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 RALGAPA1Q6GYQ0 2036 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 TMEM110-MUSTN1A8MSY1 372 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 DAPK3O43293 454 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 BNIP3LO60238 219 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 RAMP2O60895 175 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 ZNF217O75362 1048 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 IL1R2P27930 398 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 PCK1P35558 622 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 ACVRL1P37023 503 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 DHPSP49366 369 aaPredicted RBP15.11■□□□□ 0.01
USP4-212ENST00000486549 ZNF783Q6ZMS7 281 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 ARMCX6Q7L4S7 300 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 DGLUCYQ7Z3D6 616 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 CPNE8Q86YQ8 564 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 DEFB119Q8N690 84 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 NIPA2Q8N8Q9 360 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 RTL3Q8N8U3 475 aaKnown RBP15.11■□□□□ 0.01
USP4-212ENST00000486549 ATP11CQ8NB49 1132 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 RMDN1Q96DB5 314 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 ZC3H10Q96K80 434 aaKnown RBP15.11■□□□□ 0.01
USP4-212ENST00000486549 CATSPERBQ9H7T0 1116 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 OSGEPQ9NPF4 335 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 DLL3Q9NYJ7 618 aa15.11■□□□□ 0.01
USP4-212ENST00000486549 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 IGHV1OR15-9A0A0B4J2B8 117 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 TARSL2A2RTX5 802 aaKnown RBP15.1■□□□□ 0.01
USP4-212ENST00000486549 K7ERQ8 282 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 FGF10O15520 208 aaPredicted RBP15.1■□□□□ 0.01
USP4-212ENST00000486549 MT-CO1P00395 513 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 DNTTP04053 509 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 SRCP12931 536 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 GOT1P17174 413 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 TPMTP51580 245 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 RPS14P62263 151 aaKnown RBP15.1■□□□□ 0.01
USP4-212ENST00000486549 RPL6Q02878 288 aaKnown RBP15.1■□□□□ 0.01
USP4-212ENST00000486549 SPEM2Q0P670 501 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 DLG2Q15700 870 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 C9orf64Q5T6V5 341 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 PMS2CLQ68D20 193 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 ZNF776Q68DI1 518 aaPredicted RBP15.1■□□□□ 0.01
USP4-212ENST00000486549 TXNRD3NBQ6F5E7 133 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 Q6ZVU0 165 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 FAM124AQ86V42 546 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 TMEFF1Q8IYR6 380 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 STK40Q8N2I9 435 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 SH2D3CQ8N5H7 860 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 SLC35G2Q8TBE7 412 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 PTPRN2Q92932 1015 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 ARHGEF2Q92974 986 aaKnown RBP15.1■□□□□ 0.01
USP4-212ENST00000486549 PANX2Q96RD6 677 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 RETREG1Q9H6L5 497 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 FBRSQ9HAH7 460 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 SEMA4GQ9NTN9 838 aa15.1■□□□□ 0.01
USP4-212ENST00000486549 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.1■□□□□ 0.01
USP4-212ENST00000486549 SOWAHDA6NJG2 315 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 EIF3CLB5ME19 914 aaKnown RBP15.09■□□□□ 0.01
USP4-212ENST00000486549 SMAD6O43541 496 aaKnown RBP15.09■□□□□ 0.01
USP4-212ENST00000486549 ATP9BO43861 1147 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 RNASEH1O60930 286 aaKnown RBP15.09■□□□□ 0.01
USP4-212ENST00000486549 NDUFS2O75306 463 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 PROSCO94903 275 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 RARAP10276 462 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 CDC25BP30305 580 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 HTR7P34969 479 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 CYLC1P35663 651 aaPredicted RBP15.09■□□□□ 0.01
USP4-212ENST00000486549 ETFBP38117 255 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 MAGEA1P43355 309 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 PSMD8P48556 350 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 ARF5P84085 180 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 SLC25A11Q02978 314 aaKnown RBP15.09■□□□□ 0.01
USP4-212ENST00000486549 MESDQ14696 234 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 POLD3Q15054 466 aaPredicted RBP15.09■□□□□ 0.01
USP4-212ENST00000486549 CCDC6Q16204 474 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 RSPO4Q2I0M5 234 aaPredicted RBP15.09■□□□□ 0.01
USP4-212ENST00000486549 BOLA3Q53S33 107 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 RETSATQ6NUM9 610 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 LEKR1Q6ZMV7 388 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 RFX8Q6ZV50 586 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 LPCAT2Q7L5N7 544 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 PSTKQ8IV42 348 aaKnown RBP15.09■□□□□ 0.01
USP4-212ENST00000486549 MMAAQ8IVH4 418 aaKnown RBP15.09■□□□□ 0.01
USP4-212ENST00000486549 NETO1Q8TDF5 533 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 GANCQ8TET4 914 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 FRS2Q8WU20 508 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 EIF3CQ99613 913 aaKnown RBP15.09■□□□□ 0.01
USP4-212ENST00000486549 RTKNQ9BST9 563 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 RSPH9Q9H1X1 276 aaPredicted RBP15.09■□□□□ 0.01
USP4-212ENST00000486549 MAGEH1Q9H213 219 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 ARRDC1-AS1Q9H2J1 176 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 ITM2CQ9NQX7 267 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 USP36Q9P275 1121 aaKnown RBP15.09■□□□□ 0.01
USP4-212ENST00000486549 HS3ST2Q9Y278 367 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 ACTL7AQ9Y615 435 aa15.09■□□□□ 0.01
USP4-212ENST00000486549 SPTBN4Q9H254 2564 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms