RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	SPACA3	Q8IXA5	215 aa		10.9	□□□□□ -0.66
HMGN1-215	ENST00000485550	CCAR2	Q8N163	923 aa	Known RBP	10.9	□□□□□ -0.66
HMGN1-215	ENST00000485550	FAM181A	Q8N9Y4	354 aa		10.9	□□□□□ -0.66
HMGN1-215	ENST00000485550	SHC3	Q92529	594 aa		10.9	□□□□□ -0.66
HMGN1-215	ENST00000485550	FGF11	Q92914	225 aa		10.9	□□□□□ -0.66
HMGN1-215	ENST00000485550	NAF1	Q96HR8	494 aa	Known RBP	10.9	□□□□□ -0.66
HMGN1-215	ENST00000485550	FAM129B	Q96TA1	746 aa		10.9	□□□□□ -0.66
HMGN1-215	ENST00000485550	OMD	Q99983	421 aa		10.9	□□□□□ -0.66
HMGN1-215	ENST00000485550	TRIM62	Q9BVG3	475 aa		10.9	□□□□□ -0.66
HMGN1-215	ENST00000485550	NRSN2	Q9GZP1	204 aa		10.9	□□□□□ -0.66
HMGN1-215	ENST00000485550	PCED1A	Q9H1Q7	454 aa		10.9	□□□□□ -0.66
HMGN1-215	ENST00000485550	SIX2	Q9NPC8	291 aa		10.9	□□□□□ -0.66
HMGN1-215	ENST00000485550	PCDHGA1	Q9Y5H4	931 aa		10.9	□□□□□ -0.66
HMGN1-215	ENST00000485550		A0A1B0GTQ1	180 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	EDDM13	A0A1B0GTR0	161 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	CAPN8	A6NHC0	703 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	IL1B	P01584	269 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	ERBB2	P04626	1255 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	SRPRA	P08240	638 aa	Known RBP	10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	CCR1	P32246	355 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	CLCN1	P35523	988 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	KRT9	P35527	623 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	ACADVL	P49748	655 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	IRAK1	P51617	712 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	C21orf59	P57076	290 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	RNASE9	P60153	205 aa	Known RBP	10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	CENPC	Q03188	943 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	PTK2	Q05397	1052 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	EIF4EBP2	Q13542	120 aa	Predicted RBP	10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	LY6D	Q14210	128 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	ACCSL	Q4AC99	568 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	EFHC1	Q5JVL4	640 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	FBXL22	Q6P050	247 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	FBXL19	Q6PCT2	694 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	C11orf57	Q6ZUT1	292 aa	Predicted RBP	10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	USP30	Q70CQ3	517 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	C14orf80	Q86SX3	495 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	SLC47A2	Q86VL8	602 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	ZNF454	Q8N9F8	522 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	MLKL	Q8NB16	471 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	PTPRN2	Q92932	1015 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	KCTD12	Q96CX2	325 aa	Known RBP	10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	FAM81B	Q96LP2	452 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	SLC6A18	Q96N87	628 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	RPRD1A	Q96P16	312 aa	Predicted RBP	10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	SLC2A13	Q96QE2	648 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	PRMT1	Q99873	361 aa	Known RBP	10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	ORAI3	Q9BRQ5	295 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	SYNC	Q9H7C4	482 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	EBF2	Q9HAK2	575 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	OSGEP	Q9NPF4	335 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	VANGL2	Q9ULK5	521 aa		10.89	□□□□□ -0.67
HMGN1-215	ENST00000485550	TARSL2	A2RTX5	802 aa	Known RBP	10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550		M0QYT0	321 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	PES1	O00541	588 aa	Known RBP	10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	BNIP3L	O60238	219 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	HSF2BP	O75031	334 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	ITGAV	P06756	1048 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	GLI1	P08151	1106 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	KRT10	P13645	584 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	PRKCSH	P14314	528 aa	Predicted RBP	10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	NNMT	P40261	264 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	METAP1	P53582	386 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	SLC6A3	Q01959	620 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	KCNC4	Q03721	635 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	AUH	Q13825	339 aa	Known RBP	10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	POM121L1P	Q3SYA9	428 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	PTPN20	Q4JDL3	420 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	RABGAP1L	Q5R372	815 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	ARHGAP40	Q5TG30	622 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	TAF3	Q5VWG9	929 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	ERICH1	Q86X53	443 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	AADAT	Q8N5Z0	425 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	EID2	Q8N6I1	236 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	KDM1B	Q8NB78	822 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	OR52K2	Q8NGK3	314 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	OR14C36	Q8NHC7	312 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	NOX5	Q96PH1	765 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	LGMN	Q99538	433 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	SIK2	Q9H0K1	926 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	PDCL3	Q9H2J4	239 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	NDST4	Q9H3R1	872 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	CPNE5	Q9HCH3	593 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	AASDHPPT	Q9NRN7	309 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	SCML1	Q9UN30	329 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	PCDHGC3	Q9UN70	934 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	SNX10	Q9Y5X0	201 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	HS3ST4	Q9Y661	456 aa		10.88	□□□□□ -0.67
HMGN1-215	ENST00000485550	TBC1D3D	A0A087WVF3	549 aa		10.87	□□□□□ -0.67
HMGN1-215	ENST00000485550	TBC1D3I	A0A087WXS9	549 aa		10.87	□□□□□ -0.67
HMGN1-215	ENST00000485550	TBC1D3E	A0A087X179	549 aa		10.87	□□□□□ -0.67
HMGN1-215	ENST00000485550	TBC1D3K	A0A087X1G2	549 aa		10.87	□□□□□ -0.67
HMGN1-215	ENST00000485550	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	10.87	□□□□□ -0.67
HMGN1-215	ENST00000485550		A0A1B0GVM2	712 aa		10.87	□□□□□ -0.67
HMGN1-215	ENST00000485550		A0A1W2PPC4	97 aa		10.87	□□□□□ -0.67
HMGN1-215	ENST00000485550	GTPBP10	A4D1E9	387 aa	Known RBP	10.87	□□□□□ -0.67
HMGN1-215	ENST00000485550	TBC1D3F	A6NER0	549 aa	Predicted RBP	10.87	□□□□□ -0.67
HMGN1-215	ENST00000485550	TCAF2	A6NFQ2	919 aa		10.87	□□□□□ -0.67
HMGN1-215	ENST00000485550	LRRC72	A6NJI9	287 aa		10.87	□□□□□ -0.67

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