RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 AP4E1Q9UPM8 1137 aa18.44■□□□□ 0.54
HDAC6-225ENST00000483506 CEP250Q9BV73 2442 aa18.44■□□□□ 0.54
HDAC6-225ENST00000483506 FGF10O15520 208 aaPredicted RBP18.43■□□□□ 0.54
HDAC6-225ENST00000483506 PRPSAP2O60256 369 aa18.43■□□□□ 0.54
HDAC6-225ENST00000483506 FOXD2O60548 495 aaPredicted RBP18.43■□□□□ 0.54
HDAC6-225ENST00000483506 ZNF806P0C7X5 589 aa18.43■□□□□ 0.54
HDAC6-225ENST00000483506 ACADMP11310 421 aa18.43■□□□□ 0.54
HDAC6-225ENST00000483506 SRCP12931 536 aa18.43■□□□□ 0.54
HDAC6-225ENST00000483506 EPHB2P29323 1055 aa18.43■□□□□ 0.54
HDAC6-225ENST00000483506 MPLP40238 635 aa18.43■□□□□ 0.54
HDAC6-225ENST00000483506 NUMBP49757 651 aa18.43■□□□□ 0.54
HDAC6-225ENST00000483506 ZNF135P52742 658 aaPredicted RBP18.43■□□□□ 0.54
HDAC6-225ENST00000483506 RPL6Q02878 288 aaKnown RBP18.43■□□□□ 0.54
HDAC6-225ENST00000483506 PEAR1Q5VY43 1037 aaPredicted RBP18.43■□□□□ 0.54
HDAC6-225ENST00000483506 ARHGEF2Q92974 986 aaKnown RBP18.43■□□□□ 0.54
HDAC6-225ENST00000483506 ZNF419Q96HQ0 510 aaPredicted RBP18.43■□□□□ 0.54
HDAC6-225ENST00000483506 FAM129BQ96TA1 746 aa18.43■□□□□ 0.54
HDAC6-225ENST00000483506 SNRNP25Q9BV90 132 aaKnown RBP18.43■□□□□ 0.54
HDAC6-225ENST00000483506 MAGEH1Q9H213 219 aa18.43■□□□□ 0.54
HDAC6-225ENST00000483506 DEF6Q9H4E7 631 aa18.43■□□□□ 0.54
HDAC6-225ENST00000483506 UVRAGQ9P2Y5 699 aa18.43■□□□□ 0.54
HDAC6-225ENST00000483506 IP6K2Q9UHH9 426 aa18.43■□□□□ 0.54
HDAC6-225ENST00000483506 ANAPC7Q9UJX3 599 aa18.43■□□□□ 0.54
HDAC6-225ENST00000483506 USP18Q9UMW8 372 aa18.43■□□□□ 0.54
HDAC6-225ENST00000483506 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 ALOX15BO15296 676 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 AKR1B10O60218 316 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 RNASEH1O60930 286 aaKnown RBP18.42■□□□□ 0.54
HDAC6-225ENST00000483506 MT-CO1P00395 513 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 DNTTP04053 509 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 H2AFZP0C0S5 128 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 VAV1P15498 845 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 HOXD12P35452 270 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 DPP6P42658 865 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 PTGER3P43115 390 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 DHPSP49366 369 aaPredicted RBP18.42■□□□□ 0.54
HDAC6-225ENST00000483506 ARF5P84085 180 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 SLC20A2Q08357 652 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 DLG2Q15700 870 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 CA9Q16790 459 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 TTC31Q49AM3 519 aaPredicted RBP18.42■□□□□ 0.54
HDAC6-225ENST00000483506 RETSATQ6NUM9 610 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 USP30Q70CQ3 517 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 H2AFVQ71UI9 128 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 TMEFF1Q8IYR6 380 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 KIAA2013Q8IYS2 634 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 CADM4Q8NFZ8 388 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 TOE1Q96GM8 510 aaKnown RBP18.42■□□□□ 0.54
HDAC6-225ENST00000483506 CCDC42Q96M95 316 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 PACSIN1Q9BY11 444 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 PCED1AQ9H1Q7 454 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 PABPC3Q9H361 631 aaKnown RBP18.42■□□□□ 0.54
HDAC6-225ENST00000483506 NOL6Q9H6R4 1146 aaKnown RBP18.42■□□□□ 0.54
HDAC6-225ENST00000483506 CATSPERBQ9H7T0 1116 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 ATP13A1Q9HD20 1204 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 VPS45Q9NRW7 570 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 PCSK1NQ9UHG2 260 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 SPTBN4Q9H254 2564 aa18.42■□□□□ 0.54
HDAC6-225ENST00000483506 GON4LQ3T8J9 2241 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 CREB3O43889 395 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 RAMP2O60895 175 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 TMEM253P0C7T8 217 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 GLDCP23378 1020 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 IL1R2P27930 398 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 SERPINH1P50454 418 aaKnown RBP18.41■□□□□ 0.54
HDAC6-225ENST00000483506 TPI1P60174 286 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 CREB5Q02930 508 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 CST6Q15828 149 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 BOLA3Q53S33 107 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 LYSMD4Q5XG99 296 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 PRR23CQ6ZRP0 262 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 CYP2U1Q7Z449 544 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 CACUL1Q86Y37 369 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 SLC41A1Q8IVJ1 513 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 UMODL1-AS1Q8N2C9 162 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 STK40Q8N2I9 435 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 ZNF564Q8TBZ8 553 aaPredicted RBP18.41■□□□□ 0.54
HDAC6-225ENST00000483506 CTNNBL1Q8WYA6 563 aaPredicted RBP18.41■□□□□ 0.54
HDAC6-225ENST00000483506 KCTD15Q96SI1 283 aaPredicted RBP18.41■□□□□ 0.54
HDAC6-225ENST00000483506 CEP44Q9C0F1 390 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 DHX35Q9H5Z1 703 aaKnown RBP18.41■□□□□ 0.54
HDAC6-225ENST00000483506 GPATCH2LQ9NWQ4 482 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 DONSONQ9NYP3 566 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 DNAI1Q9UI46 699 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 LCMT1Q9UIC8 334 aa18.41■□□□□ 0.54
HDAC6-225ENST00000483506 NUMA1Q14980 2115 aa18.4■□□□□ 0.54
HDAC6-225ENST00000483506 MYO1FO00160 1098 aa18.4■□□□□ 0.54
HDAC6-225ENST00000483506 CBX4O00257 560 aa18.4■□□□□ 0.54
HDAC6-225ENST00000483506 MCF2LO15068 1137 aa18.4■□□□□ 0.54
HDAC6-225ENST00000483506 NDUFS2O75306 463 aa18.4■□□□□ 0.54
HDAC6-225ENST00000483506 CD160O95971 181 aa18.4■□□□□ 0.54
HDAC6-225ENST00000483506 ADH1BP00325 375 aa18.4■□□□□ 0.54
HDAC6-225ENST00000483506 ACVRL1P37023 503 aa18.4■□□□□ 0.54
HDAC6-225ENST00000483506 HCAR3P49019 387 aa18.4■□□□□ 0.54
HDAC6-225ENST00000483506 YBEYP58557 167 aaPredicted RBP18.4■□□□□ 0.54
HDAC6-225ENST00000483506 SLC25A11Q02978 314 aaKnown RBP18.4■□□□□ 0.54
HDAC6-225ENST00000483506 LMNB2Q03252 620 aa18.4■□□□□ 0.54
HDAC6-225ENST00000483506 ZNF33AQ06730 810 aa18.4■□□□□ 0.54
HDAC6-225ENST00000483506 SFSWAPQ12872 951 aaKnown RBP18.4■□□□□ 0.54
HDAC6-225ENST00000483506 DPYSL2Q16555 572 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms