RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 WASH3PC4AMC7 463 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 RASA4BC9J798 803 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 RASA4O43374 803 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 KRT1P04264 644 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 PRKCHP24723 683 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 SERPINB6P35237 376 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 ACVRL1P37023 503 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 CLCN6P51797 869 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 GEMIN4P57678 1058 aaKnown RBP20.19■□□□□ 0.82
LIME1-205ENST00000480139 SLC20A2Q08357 652 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 STARD3Q14849 445 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 HNRNPA1L2Q32P51 320 aaKnown RBP20.19■□□□□ 0.82
LIME1-205ENST00000480139 ANKRD20A8PQ5CZ79 823 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 ZFYVE27Q5T4F4 411 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 IL31Q6EBC2 164 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 NELL1Q92832 810 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 SPON2Q9BUD6 331 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 KLHL11Q9NVR0 708 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 SUN2Q9UH99 717 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 HPCAL4Q9UM19 191 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 GUCA1BQ9UMX6 200 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 PCDHA3Q9Y5H8 950 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 CAPN6Q9Y6Q1 641 aa20.19■□□□□ 0.82
LIME1-205ENST00000480139 CCDC163A0A0D9SF12 145 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 CCDC66A2RUB6 948 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 ZSCAN5CA6NGD5 496 aaPredicted RBP20.18■□□□□ 0.82
LIME1-205ENST00000480139 CBX4O00257 560 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 KDELR3O43731 214 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 ATP9BO43861 1147 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 SNAP91O60641 907 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 PALMO75781 387 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 APBB3O95704 486 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 C7P10643 843 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 AMPD1P23109 780 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 CTNNA2P26232 953 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 WASP42768 502 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 STK19P49842 368 aaPredicted RBP20.18■□□□□ 0.82
LIME1-205ENST00000480139 NRLP54845 237 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 ARF5P84085 180 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 CSTF1Q05048 431 aaKnown RBP20.18■□□□□ 0.82
LIME1-205ENST00000480139 MMRN1Q13201 1228 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 SERINC3Q13530 473 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 CAMK2GQ13555 558 aaPredicted RBP20.18■□□□□ 0.82
LIME1-205ENST00000480139 ODF2Q5BJF6 829 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 NT5DC3Q86UY8 548 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 ARHGAP12Q8IWW6 846 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 SH2D3CQ8N5H7 860 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 NPWQ8N729 165 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 TSTD1Q8NFU3 115 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 PCDH19Q8TAB3 1148 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 HMCESQ96FZ2 354 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 RPL10LQ96L21 214 aaKnown RBP20.18■□□□□ 0.82
LIME1-205ENST00000480139 FBRSQ9HAH7 460 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 ETNK2Q9NVF9 386 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 POLR3BQ9NW08 1133 aaPredicted RBP20.18■□□□□ 0.82
LIME1-205ENST00000480139 EBF1Q9UH73 591 aa20.18■□□□□ 0.82
LIME1-205ENST00000480139 TARSL2A2RTX5 802 aaKnown RBP20.17■□□□□ 0.82
LIME1-205ENST00000480139 ARHGAP42A6NI28 874 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 MIF4GDA9UHW6 222 aaKnown RBP20.17■□□□□ 0.82
LIME1-205ENST00000480139 SYNCRIPO60506 623 aaKnown RBP20.17■□□□□ 0.82
LIME1-205ENST00000480139 ALDH1A2O94788 518 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 EPHX1P07099 455 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 TNNT1P13805 278 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 COL9A1P20849 921 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 GLDCP23378 1020 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 PAFAH1B3Q15102 231 aaKnown RBP20.17■□□□□ 0.82
LIME1-205ENST00000480139 TAZQ16635 292 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 PEX26Q7Z412 305 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 METTL3Q86U44 580 aaKnown RBP20.17■□□□□ 0.82
LIME1-205ENST00000480139 RASSF3Q86WH2 238 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 PRSS33Q8NF86 280 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 EXD1Q8NHP7 514 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 FRS2Q8WU20 508 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 ZNF830Q96NB3 372 aaPredicted RBP20.17■□□□□ 0.82
LIME1-205ENST00000480139 RNF157Q96PX1 679 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 HHIPQ96QV1 700 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 SLC39A8Q9C0K1 460 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 IRF2BPLQ9H1B7 796 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 SLCO3A1Q9UIG8 710 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 AMFRQ9UKV5 643 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 HCN4Q9Y3Q4 1203 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 RAD54BQ9Y620 910 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 NUP205Q92621 2012 aa20.17■□□□□ 0.82
LIME1-205ENST00000480139 EDDM13A0A1B0GTR0 161 aa20.16■□□□□ 0.82
LIME1-205ENST00000480139 TCRBV21S2A2A0A5A6 115 aa20.16■□□□□ 0.82
LIME1-205ENST00000480139 ZRANB2O95218 330 aaKnown RBP eCLIP20.16■□□□□ 0.82
LIME1-205ENST00000480139 SP9P0CG40 484 aa20.16■□□□□ 0.82
LIME1-205ENST00000480139 SRCP12931 536 aa20.16■□□□□ 0.82
LIME1-205ENST00000480139 HLA-EP13747 358 aa20.16■□□□□ 0.82
LIME1-205ENST00000480139 MARCKSL1P49006 195 aa20.16■□□□□ 0.82
LIME1-205ENST00000480139 NUMBP49757 651 aa20.16■□□□□ 0.82
LIME1-205ENST00000480139 SERPINH1P50454 418 aaKnown RBP20.16■□□□□ 0.82
LIME1-205ENST00000480139 NCBP2-AS2Q69YL0 99 aa20.16■□□□□ 0.82
LIME1-205ENST00000480139 KIAA1211LQ6NV74 962 aa20.16■□□□□ 0.82
LIME1-205ENST00000480139 RCOR2Q8IZ40 523 aa20.16■□□□□ 0.82
LIME1-205ENST00000480139 PQLC3Q8N755 202 aa20.16■□□□□ 0.82
LIME1-205ENST00000480139 CASKIN2Q8WXE0 1202 aa20.16■□□□□ 0.82
LIME1-205ENST00000480139 KRT35Q92764 455 aa20.16■□□□□ 0.82
LIME1-205ENST00000480139 RBM41Q96IZ5 413 aaKnown RBP20.16■□□□□ 0.82
LIME1-205ENST00000480139 CELF6Q96J87 481 aaKnown RBP20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms