RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 FAM162AQ96A26 154 aa13.75□□□□□ -0.21
USP42-206ENST00000479544 GPRASP2Q96D09 838 aa13.75□□□□□ -0.21
USP42-206ENST00000479544 OR52B2Q96RD2 323 aa13.75□□□□□ -0.21
USP42-206ENST00000479544 PIN4Q9Y237 131 aaKnown RBP13.75□□□□□ -0.21
USP42-206ENST00000479544 KCPQ6ZWJ8 1503 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 CRHR1P34998 444 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 YAP1P46937 504 aaKnown RBP13.74□□□□□ -0.21
USP42-206ENST00000479544 POLD3Q15054 466 aaPredicted RBP13.74□□□□□ -0.21
USP42-206ENST00000479544 SLC9B1Q4ZJI4 515 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 TAS2R42Q7RTR8 314 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 DEFB106AQ8N104 65 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 NDRG1Q92597 394 aaKnown RBP13.74□□□□□ -0.21
USP42-206ENST00000479544 FICDQ9BVA6 458 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 HPS4Q9NQG7 708 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 TIMM13Q9Y5L4 95 aaPredicted RBP13.74□□□□□ -0.21
USP42-206ENST00000479544 LACTBL1A8MY62 500 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 CLIC3O95833 236 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 ASS1P00966 412 aaKnown RBP13.74□□□□□ -0.21
USP42-206ENST00000479544 ASLP04424 464 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 PPARGP37231 505 aaPredicted RBP13.74□□□□□ -0.21
USP42-206ENST00000479544 ATXN1P54253 815 aaKnown RBP13.74□□□□□ -0.21
USP42-206ENST00000479544 CHRNB3Q05901 458 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 CERCAMQ5T4B2 595 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 EEF1DP3Q658K8 133 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 EFHBQ8N7U6 833 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 NAT8LQ8N9F0 302 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 BLOC1S5Q8TDH9 187 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 BORCS6Q96GS4 357 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 TBCDQ9BTW9 1192 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 GATA5Q9BWX5 397 aaPredicted RBP13.74□□□□□ -0.21
USP42-206ENST00000479544 CLK4Q9HAZ1 481 aaKnown RBP13.74□□□□□ -0.21
USP42-206ENST00000479544 SP110Q9HB58 689 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 ITGA11Q9UKX5 1188 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 CRYL1Q9Y2S2 319 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 CRYBG1Q9Y4K1 1723 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 LSM1O15116 133 aaKnown RBP13.74□□□□□ -0.21
USP42-206ENST00000479544 LDLRP01130 860 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 APOA4P06727 396 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 CCDC159P0C7I6 412 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 TFEBP19484 476 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 LY6KQ17RY6 165 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 AGAP9Q5VTM2 703 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 CBR4Q8N4T8 237 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 APPL2Q8NEU8 664 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 HPS1Q92902 700 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 DCPSQ96C86 337 aaKnown RBP13.74□□□□□ -0.21
USP42-206ENST00000479544 MFSD3Q96ES6 412 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 BBS2Q9BXC9 721 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 CDH19Q9H159 772 aa13.74□□□□□ -0.21
USP42-206ENST00000479544 M0QZ92 97 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 PDLIM1O00151 329 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 ZNF862O60290 1169 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 METTL18O95568 372 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 HSMCR30P0CW71 290 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 ENTPD1P49961 510 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 ZNF143P52747 638 aaPredicted RBP13.73□□□□□ -0.21
USP42-206ENST00000479544 NOMO1Q15155 1222 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 FIG4Q92562 907 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 SLCO2A1Q92959 643 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 C6orf62Q9GZU0 229 aaPredicted RBP13.73□□□□□ -0.21
USP42-206ENST00000479544 ABCB10Q9NRK6 738 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 CYP1A1P04798 512 aaPredicted RBP13.73□□□□□ -0.21
USP42-206ENST00000479544 S100A5P33763 92 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 CCNA1P78396 465 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 STILQ15468 1287 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 LSM12Q3MHD2 195 aaKnown RBP13.73□□□□□ -0.21
USP42-206ENST00000479544 SAMD4BQ5PRF9 694 aaKnown RBP13.73□□□□□ -0.21
USP42-206ENST00000479544 GRTP1Q5TC63 336 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 OR52E8Q6IFG1 317 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 RNF19BQ6ZMZ0 732 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 SLC35B2Q8TB61 432 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 LRRC39Q96DD0 335 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 TNIP3Q96KP6 325 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 SLC39A3Q9BRY0 314 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 DEFB129Q9H1M3 183 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 NMRK2Q9NPI5 230 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 NUDT5Q9UKK9 219 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 PCDHA11Q9Y5I1 949 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 BIRC5O15392 142 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 MAGEB2O15479 319 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 C4BPAP04003 597 aaKnown RBP13.73□□□□□ -0.21
USP42-206ENST00000479544 MYL4P12829 197 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 CAMK1DQ8IU85 385 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 SKA1Q96BD8 255 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 CPNE1Q99829 537 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 CXorf21Q9HAI6 301 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 CDHR5Q9HBB8 845 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 ZFYVE28Q9HCC9 887 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 MID1IP1Q9NPA3 183 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 NDUFAF1Q9Y375 327 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 TRIM17Q9Y577 477 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 PFDN6O15212 129 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 ADIGQ0VDE8 80 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 OLIG2Q13516 323 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 ZNF460Q14592 562 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 CHST15Q7LFX5 561 aaPredicted RBP13.73□□□□□ -0.21
USP42-206ENST00000479544 SPPL2CQ8IUH8 684 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 KCTD14Q9BQ13 255 aaPredicted RBP13.73□□□□□ -0.21
USP42-206ENST00000479544 PCDH18Q9HCL0 1135 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 PNPLA3Q9NST1 481 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms