RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 TMEM270Q6UE05 265 aa17.67■□□□□ 0.42
VIM-204ENST00000478746 CCDC81Q6ZN84 652 aa17.67■□□□□ 0.42
VIM-204ENST00000478746 PRICKLE2Q7Z3G6 844 aa17.67■□□□□ 0.42
VIM-204ENST00000478746 CCAR2Q8N163 923 aaKnown RBP17.67■□□□□ 0.42
VIM-204ENST00000478746 UBR7Q8N806 425 aa17.67■□□□□ 0.42
VIM-204ENST00000478746 OR13H1Q8NG92 308 aa17.67■□□□□ 0.42
VIM-204ENST00000478746 IFI44Q8TCB0 444 aa17.67■□□□□ 0.42
VIM-204ENST00000478746 ERCC4Q92889 916 aaPredicted RBP17.67■□□□□ 0.42
VIM-204ENST00000478746 FAM149B1Q96BN6 582 aa17.67■□□□□ 0.42
VIM-204ENST00000478746 GRAMD1AQ96CP6 724 aa17.67■□□□□ 0.42
VIM-204ENST00000478746 BTN2A3PQ96KV6 586 aa17.67■□□□□ 0.42
VIM-204ENST00000478746 PPP1R9BQ96SB3 815 aa17.67■□□□□ 0.42
VIM-204ENST00000478746 DUSP23Q9BVJ7 150 aa17.67■□□□□ 0.42
VIM-204ENST00000478746 CAAP1Q9H8G2 361 aa17.67■□□□□ 0.42
VIM-204ENST00000478746 LY6G6EA0A0G2JKS1 128 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 A0A1W2PQU0 124 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 F5H5T6 163 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 K7ELQ4 463 aaPredicted RBP17.66■□□□□ 0.42
VIM-204ENST00000478746 K7ESM1 405 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 ALOX15BO15296 676 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 ATP9BO43861 1147 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 PRR29P0C7W0 189 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 ZSCAN22P10073 491 aaPredicted RBP17.66■□□□□ 0.42
VIM-204ENST00000478746 CMA1P23946 247 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 OXCT1P55809 520 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 STILQ15468 1287 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 DCAF17Q5H9S7 520 aaPredicted RBP17.66■□□□□ 0.42
VIM-204ENST00000478746 SYPL2Q5VXT5 272 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 TAC4Q86UU9 113 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 IFT43Q96FT9 208 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 FZD3Q9NPG1 666 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 SLC12A6Q9UHW9 1150 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 SLC25A13Q9UJS0 675 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 PCDHB4Q9Y5E5 795 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 U3KQA8 63 aa17.66■□□□□ 0.42
VIM-204ENST00000478746 SART1O43290 800 aaKnown RBP17.65■□□□□ 0.42
VIM-204ENST00000478746 BNIP3LO60238 219 aa17.65■□□□□ 0.42
VIM-204ENST00000478746 LZTS3O60299 673 aaPredicted RBP17.65■□□□□ 0.42
VIM-204ENST00000478746 F13A1P00488 732 aa17.65■□□□□ 0.42
VIM-204ENST00000478746 TGM2P21980 687 aa17.65■□□□□ 0.42
VIM-204ENST00000478746 HNRNPA2B1P22626 353 aaKnown RBP17.65■□□□□ 0.42
VIM-204ENST00000478746 CLDN2P57739 230 aa17.65■□□□□ 0.42
VIM-204ENST00000478746 HNRNPKP61978 463 aaKnown RBP eCLIP17.65■□□□□ 0.42
VIM-204ENST00000478746 SKOR1P84550 965 aa17.65■□□□□ 0.42
VIM-204ENST00000478746 CCDC15Q0P6D6 951 aa17.65■□□□□ 0.42
VIM-204ENST00000478746 DPYDQ12882 1025 aa17.65■□□□□ 0.42
VIM-204ENST00000478746 ZNF284Q2VY69 593 aa17.65■□□□□ 0.42
VIM-204ENST00000478746 ZNF542PQ5EBM4 170 aa17.65■□□□□ 0.42
VIM-204ENST00000478746 Q6ZVU0 165 aa17.65■□□□□ 0.42
VIM-204ENST00000478746 HORMAD1Q86X24 394 aa17.65■□□□□ 0.42
VIM-204ENST00000478746 CIR1Q86X95 450 aaPredicted RBP17.65■□□□□ 0.42
VIM-204ENST00000478746 ATP6V0D2Q8N8Y2 350 aa17.65■□□□□ 0.42
VIM-204ENST00000478746 ATXN7L3BQ96GX2 97 aa17.65■□□□□ 0.42
VIM-204ENST00000478746 ZSWIM1Q9BR11 485 aa17.65■□□□□ 0.42
VIM-204ENST00000478746 FAM117AQ9C073 453 aa17.65■□□□□ 0.42
VIM-204ENST00000478746 DNAJC28Q9NX36 388 aa17.65■□□□□ 0.42
VIM-204ENST00000478746 IL17BQ9UHF5 180 aa17.65■□□□□ 0.42
VIM-204ENST00000478746 FARP1Q9Y4F1 1045 aaPredicted RBP17.65■□□□□ 0.42
VIM-204ENST00000478746 HEMK1Q9Y5R4 338 aaPredicted RBP17.65■□□□□ 0.42
VIM-204ENST00000478746 A0A1W2PNU3 283 aaPredicted RBP17.64■□□□□ 0.41
VIM-204ENST00000478746 CPED1A4D0V7 1026 aa17.64■□□□□ 0.41
VIM-204ENST00000478746 RNF225M0QZC1 329 aaPredicted RBP17.64■□□□□ 0.41
VIM-204ENST00000478746 NEBLO76041 1014 aa17.64■□□□□ 0.41
VIM-204ENST00000478746 BRD2P25440 801 aaKnown RBP17.64■□□□□ 0.41
VIM-204ENST00000478746 PIP5KL1Q5T9C9 394 aa17.64■□□□□ 0.41
VIM-204ENST00000478746 TTC39BQ5VTQ0 682 aaPredicted RBP17.64■□□□□ 0.41
VIM-204ENST00000478746 FOXR1Q6PIV2 292 aa17.64■□□□□ 0.41
VIM-204ENST00000478746 Q6ZSR6 202 aa17.64■□□□□ 0.41
VIM-204ENST00000478746 BEND5Q7L4P6 421 aa17.64■□□□□ 0.41
VIM-204ENST00000478746 DCP2Q8IU60 420 aaKnown RBP17.64■□□□□ 0.41
VIM-204ENST00000478746 RNF34Q969K3 372 aa17.64■□□□□ 0.41
VIM-204ENST00000478746 NOX5Q96PH1 765 aa17.64■□□□□ 0.41
VIM-204ENST00000478746 ST7Q9NRC1 585 aa17.64■□□□□ 0.41
VIM-204ENST00000478746 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.64■□□□□ 0.41
VIM-204ENST00000478746 HPSEQ9Y251 543 aa17.64■□□□□ 0.41
VIM-204ENST00000478746 PCDHGA8Q9Y5G5 932 aa17.64■□□□□ 0.41
VIM-204ENST00000478746 ENTPD2Q9Y5L3 495 aa17.64■□□□□ 0.41
VIM-204ENST00000478746 TCAF2A6NFQ2 919 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 KCNU1A8MYU2 1149 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 PCDH8O95206 1070 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 CALCAP01258 141 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 SYKP43405 635 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 DNM1Q05193 864 aaKnown RBP17.63■□□□□ 0.41
VIM-204ENST00000478746 NFATC3Q12968 1075 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 CDKN3Q16667 212 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 ZSCAN23Q3MJ62 389 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 ARL13BQ3SXY8 428 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 RABGAP1LQ5R372 815 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 CXorf57Q6NSI4 855 aaKnown RBP17.63■□□□□ 0.41
VIM-204ENST00000478746 ZCCHC8Q6NZY4 707 aaKnown RBP17.63■□□□□ 0.41
VIM-204ENST00000478746 ABI3BPQ7Z7G0 1075 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 SLC22A18ASQ8N1D0 253 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 ARL14Q8N4G2 192 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 TPCN2Q8NHX9 752 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 FAM174AQ8TBP5 190 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 ALG14Q96F25 216 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 PRR11Q96HE9 360 aaPredicted RBP17.63■□□□□ 0.41
VIM-204ENST00000478746 FEM1AQ9BSK4 669 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 TRIM62Q9BVG3 475 aa17.63■□□□□ 0.41
VIM-204ENST00000478746 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms