RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 PTAR1Q7Z6K3 402 aaPredicted RBP4.97□□□□□ -1.61
USP4-209ENST00000475873 AHI1Q8N157 1196 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 IGSF22Q8N9C0 903 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 GPBAR1Q8TDU6 330 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 STARD8Q92502 1023 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 ELMO3Q96BJ8 720 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 IL12RB2Q99665 862 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 REEP2Q9BRK0 252 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 FAM213AQ9BRX8 229 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 MFRPQ9BY79 579 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 B3GNT4Q9C0J1 378 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 CSNK1G1Q9HCP0 422 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 NCKIPSDQ9NZQ3 722 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 PILRAQ9UKJ1 303 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 DNM3Q9UQ16 869 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 NAALADL1Q9UQQ1 740 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 PCDHGA3Q9Y5H0 932 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 CUBNO60494 3623 aa4.97□□□□□ -1.61
USP4-209ENST00000475873 LRP4O75096 1905 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 EDDM13A0A1B0GTR0 161 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 GOLGA8IPA6NC78 632 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 GOLGA8JA6NMD2 632 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 TMX2-CTNND1H3BSU7 103 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 CPLX1O14810 134 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 SLC7A4O43246 635 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 RNASEH1O60930 286 aaKnown RBP4.96□□□□□ -1.62
USP4-209ENST00000475873 AP1G2O75843 785 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 MAP3K6O95382 1288 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 CST3P01034 146 aaPredicted RBP4.96□□□□□ -1.62
USP4-209ENST00000475873 CYBBP04839 570 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 ATP5BP06576 529 aaKnown RBP4.96□□□□□ -1.62
USP4-209ENST00000475873 SNRPB2P08579 225 aaKnown RBP4.96□□□□□ -1.62
USP4-209ENST00000475873 TSHRP16473 764 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 POLR2EP19388 210 aaKnown RBP4.96□□□□□ -1.62
USP4-209ENST00000475873 HNRNPA2B1P22626 353 aaKnown RBP4.96□□□□□ -1.62
USP4-209ENST00000475873 LEPRP48357 1165 aaKnown RBP4.96□□□□□ -1.62
USP4-209ENST00000475873 ADKP55263 362 aaKnown RBP4.96□□□□□ -1.62
USP4-209ENST00000475873 MAP3K7CLP57077 242 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 EFEMP1Q12805 493 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 GNL2Q13823 731 aaKnown RBP4.96□□□□□ -1.62
USP4-209ENST00000475873 KRT32Q14532 448 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 TCEA2Q15560 299 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 ZRSR2Q15696 482 aaKnown RBP4.96□□□□□ -1.62
USP4-209ENST00000475873 TMEM259Q4ZIN3 620 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 MPPE1Q53F39 396 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 PRRT3Q5FWE3 981 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 ZRANB3Q5FWF4 1079 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 FSCBQ5H9T9 825 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 MIIPQ5JXC2 388 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 KCTD16Q68DU8 428 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 C16orf46Q6P387 395 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 RFWD3Q6PCD5 774 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 BLOC1S2Q6QNY1 142 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 PARGQ86W56 976 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 CCNJLQ8IV13 435 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 DIS3L2Q8IYB7 885 aaKnown RBP4.96□□□□□ -1.62
USP4-209ENST00000475873 Q8N9G6 341 aaPredicted RBP4.96□□□□□ -1.62
USP4-209ENST00000475873 RCBTB1Q8NDN9 531 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 PCDH19Q8TAB3 1148 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 FRS2Q8WU20 508 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 ART4Q93070 314 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 JAKMIP2Q96AA8 810 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 SMARCD1Q96GM5 515 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 RPL10LQ96L21 214 aaKnown RBP4.96□□□□□ -1.62
USP4-209ENST00000475873 PRICKLE1Q96MT3 831 aaPredicted RBP4.96□□□□□ -1.62
USP4-209ENST00000475873 PLIN2Q99541 437 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 KLF6Q99612 283 aaPredicted RBP4.96□□□□□ -1.62
USP4-209ENST00000475873 CMKLR1Q99788 373 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 TIPINQ9BVW5 301 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 SDCBP2Q9H190 292 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 RWDD1Q9H446 243 aaPredicted RBP4.96□□□□□ -1.62
USP4-209ENST00000475873 SMYD3Q9H7B4 428 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 GPN2Q9H9Y4 310 aaPredicted RBP4.96□□□□□ -1.62
USP4-209ENST00000475873 RDH14Q9HBH5 336 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 INTS13Q9NVM9 706 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 COMMD8Q9NX08 183 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 SIRPGQ9P1W8 387 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 HMGXB4Q9UGU5 601 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 RASAL2Q9UJF2 1139 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 STOML2Q9UJZ1 356 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 ERVW-1Q9UQF0 538 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 ZNF510Q9Y2H8 683 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 KIF3AQ9Y496 699 aa4.96□□□□□ -1.62
USP4-209ENST00000475873 CNTRLQ7Z7A1 2325 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 GOLGA6L7A0A1B0GV03 622 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 HEATR9A2RTY3 570 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 TMEM200CA6NKL6 621 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 A6NNZ2 444 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 A8MXQ7 604 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 WIPF1O43516 503 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 PPP6R2O75170 966 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 RFPL1O75677 317 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 CTSLP07711 333 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 AKT2P31751 481 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 NOS2P35228 1153 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 RPIAP49247 311 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 PMS2P54278 862 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 COG7P83436 770 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 SEPT6Q14141 434 aa4.95□□□□□ -1.62
USP4-209ENST00000475873 ELAVL3Q14576 367 aaKnown RBP4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms