RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 BHMTQ93088 406 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 MAN1C1Q9NR34 630 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 GJB4Q9NTQ9 266 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 CKLFQ9UBR5 152 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 UBQLN1Q9UMX0 589 aaKnown RBP13.51□□□□□ -0.25
COL6A3-209ENST00000472056 SNX6Q9UNH7 406 aa13.51□□□□□ -0.25
COL6A3-209ENST00000472056 SMCO3A2RU48 225 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 PP2D1A8MPX8 630 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 ACVR2BQ13705 512 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 EFR3AQ14156 821 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 GALNT3Q14435 633 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 ZNF268Q14587 947 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 TCEA2Q15560 299 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 CLHC1Q8NHS4 586 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 C12orf66Q96MD2 445 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 CRYL1Q9Y2S2 319 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 FESP07332 822 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 NFICP08651 508 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 GPSM2P81274 684 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 DENND5BQ6ZUT9 1274 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 PAGE2Q7Z2X7 111 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 TRIM48Q8IWZ4 208 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 CHPFQ8IZ52 775 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 ACTL9Q8TC94 416 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 MXRA8Q9BRK3 442 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 ROGDIQ9GZN7 287 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 DHX33Q9H6R0 707 aaKnown RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 ANKHQ9HCJ1 492 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 SIK3Q9Y2K2 1263 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 OR14I1A6ND48 311 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 KHDRBS3O75525 346 aaKnown RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 MZF1P28698 734 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 AKR1D1P51857 326 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 SKIV2LQ15477 1246 aaKnown RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 PHF10Q8WUB8 498 aaKnown RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 IFT80Q9P2H3 777 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 IKZF3Q9UKT9 509 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 PTSQ03393 145 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 EIF5AL1Q6IS14 154 aaKnown RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 MFSD5Q6N075 450 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 SPOCD1Q6ZMY3 1216 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 NKX2-3Q8TAU0 364 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 PPP3R2Q96LZ3 170 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 SEPHS2Q99611 448 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 BCL2L14Q9BZR8 327 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 KCNN2Q9H2S1 579 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 TMEM138Q9NPI0 162 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 F5H423 210 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 FGF10O15520 208 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 AKAP8O43823 692 aaKnown RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 RNASEH1O60930 286 aaKnown RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 NFKB1P19838 968 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 PRDX6P30041 224 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 HERVK_113P62684 666 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 PYDC2Q56P42 97 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 ZNF467Q7Z7K2 595 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 MEIOBQ8N635 442 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 TTLL6Q8N841 843 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 ORAI2Q96SN7 254 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 FAM118BQ9BPY3 351 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 MYBP10242 640 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 ITIH1P19827 911 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 ZC2HC1CQ53FD0 456 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 CHST13Q8NET6 341 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 STAG3L4Q8TBR4 150 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 AGAP11Q8TF27 550 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 MTIF3Q9H2K0 278 aaKnown RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 DDIT4Q9NX09 232 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 SNX7Q9UNH6 387 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 SAMD4AQ9UPU9 718 aaKnown RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 SLC9A8Q9Y2E8 581 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 ERBB2P04626 1255 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 NWD1Q149M9 1564 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 DALRD3Q5D0E6 543 aaKnown RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 GLRA4Q5JXX5 417 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 RBM44Q6ZP01 1051 aaKnown RBP13.5□□□□□ -0.25
COL6A3-209ENST00000472056 ZFP28Q8NHY6 868 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 PRKAG3Q9UGI9 489 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 POLIQ9UNA4 740 aa13.5□□□□□ -0.25
COL6A3-209ENST00000472056 CLRN2A0PK11 232 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 FOXN3O00409 490 aaPredicted RBP13.49□□□□□ -0.25
COL6A3-209ENST00000472056 TRIM38O00635 465 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 S100A3P33764 101 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 HKDC1Q2TB90 917 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 XKRXQ6PP77 449 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 NDNQ99608 321 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 C1QTNF7Q9BXJ2 289 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 CD320Q9NPF0 282 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 AP4E1Q9UPM8 1137 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 ANGPT4Q9Y264 503 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 FOXN1O15353 648 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 PTPN3P26045 913 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 CREG2Q8IUH2 290 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 ETNPPLQ8TBG4 499 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 FAR1Q8WVX9 515 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 EPB41L1Q9H4G0 881 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 AAASQ9NRG9 546 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 CCDC167Q9P0B6 97 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 NARFQ9UHQ1 456 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 GMPPBQ9Y5P6 360 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms