RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 FOXK2Q01167 660 aa16.09■□□□□ 0.17
HDAC6-218ENST00000470942 NRG1Q02297 640 aaPredicted RBP16.09■□□□□ 0.17
HDAC6-218ENST00000470942 ELAVL3Q14576 367 aaKnown RBP16.09■□□□□ 0.17
HDAC6-218ENST00000470942 TDRD12Q587J7 1177 aaKnown RBP16.09■□□□□ 0.17
HDAC6-218ENST00000470942 PPP1R15BQ5SWA1 713 aa16.09■□□□□ 0.17
HDAC6-218ENST00000470942 DAB2IPQ5VWQ8 1189 aa16.09■□□□□ 0.17
HDAC6-218ENST00000470942 USP30Q70CQ3 517 aa16.09■□□□□ 0.17
HDAC6-218ENST00000470942 SH2D3CQ8N5H7 860 aa16.09■□□□□ 0.17
HDAC6-218ENST00000470942 ATP11CQ8NB49 1132 aa16.09■□□□□ 0.17
HDAC6-218ENST00000470942 OR7D4Q8NG98 312 aa16.09■□□□□ 0.17
HDAC6-218ENST00000470942 FRS2Q8WU20 508 aa16.09■□□□□ 0.17
HDAC6-218ENST00000470942 OR8D1Q8WZ84 308 aa16.09■□□□□ 0.17
HDAC6-218ENST00000470942 NTAN1Q96AB6 310 aa16.09■□□□□ 0.17
HDAC6-218ENST00000470942 PSMB7Q99436 277 aa16.09■□□□□ 0.17
HDAC6-218ENST00000470942 CNPY3Q9BT09 278 aa16.09■□□□□ 0.17
HDAC6-218ENST00000470942 GTPBP2Q9BX10 602 aaKnown RBP16.09■□□□□ 0.17
HDAC6-218ENST00000470942 EIF2B4Q9UI10 523 aaKnown RBP16.09■□□□□ 0.17
HDAC6-218ENST00000470942 VPS51Q9UID3 782 aa16.09■□□□□ 0.17
HDAC6-218ENST00000470942 A0A1W2PQJ5 194 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 FAM47DPA6NHR8 397 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 FAM72CH0Y354 149 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 CBX4O00257 560 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 CDX4O14627 284 aaPredicted RBP16.08■□□□□ 0.16
HDAC6-218ENST00000470942 RTN2O75298 545 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 FSBPO95073 299 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 ADH1BP00325 375 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 MT-CO1P00395 513 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 TPM3P06753 285 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 SRCP12931 536 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 MAMLD1Q13495 774 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 EFHC2Q5JST6 749 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 ARTNQ5T4W7 220 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 FAM72AQ5TYM5 149 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 FAM72DQ6L9T8 149 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 ZNF783Q6ZMS7 281 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 Q6ZVU0 165 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 DSG4Q86SJ6 1040 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 FAM72BQ86X60 149 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 HDDC3Q8N4P3 179 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 ZCCHC9Q8N567 271 aaKnown RBP16.08■□□□□ 0.16
HDAC6-218ENST00000470942 DCAF4L2Q8NA75 395 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 DNASE2BQ8WZ79 361 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 TBC1D31Q96DN5 1066 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 IQCDQ96DY2 449 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.08■□□□□ 0.16
HDAC6-218ENST00000470942 PCED1AQ9H1Q7 454 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 NEUROG2Q9H2A3 272 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 TSPY26PQ9H489 355 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 CAPN10Q9HC96 672 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 ATP13A1Q9HD20 1204 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 CNOT8Q9UFF9 292 aaKnown RBP16.08■□□□□ 0.16
HDAC6-218ENST00000470942 SERGEFQ9UGK8 458 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 DNAI1Q9UI46 699 aa16.08■□□□□ 0.16
HDAC6-218ENST00000470942 SPTBN2O15020 2390 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 A0A1B0GTW7 788 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 ARHGAP33O14559 1287 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 LRIG2O94898 1065 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 SYPP08247 313 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 RHOQP17081 205 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 C5AR1P21730 350 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 GLDCP23378 1020 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 PSMA2P25787 234 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 ZBED6P86452 979 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 OGDHQ02218 1023 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 GNA12Q03113 381 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 PPM1JQ5JR12 505 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 MANEALQ5VSG8 457 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 PLEKHA7Q6IQ23 1121 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 LINGO4Q6UY18 593 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 TMC6Q7Z403 805 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 VPS36Q86VN1 386 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 PYROXD2Q8N2H3 581 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 ZNF653Q96CK0 615 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 XPO4Q9C0E2 1151 aaKnown RBP16.07■□□□□ 0.16
HDAC6-218ENST00000470942 MYO1AQ9UBC5 1043 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 ZNF212Q9UDV6 495 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 CAPN11Q9UMQ6 739 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 HS3ST2Q9Y278 367 aa16.07■□□□□ 0.16
HDAC6-218ENST00000470942 LUC7L2Q9Y383 392 aaKnown RBP16.07■□□□□ 0.16
HDAC6-218ENST00000470942 FARP1Q9Y4F1 1045 aaPredicted RBP16.07■□□□□ 0.16
HDAC6-218ENST00000470942 BZW2Q9Y6E2 419 aaKnown RBP16.07■□□□□ 0.16
HDAC6-218ENST00000470942 CNOT1A5YKK6 2376 aaKnown RBP16.07■□□□□ 0.16
HDAC6-218ENST00000470942 PCDH15Q96QU1 1955 aa16.06■□□□□ 0.16
HDAC6-218ENST00000470942 MED19A0JLT2 244 aaPredicted RBP16.06■□□□□ 0.16
HDAC6-218ENST00000470942 LRRC72A6NJI9 287 aa16.06■□□□□ 0.16
HDAC6-218ENST00000470942 K7ERQ8 282 aa16.06■□□□□ 0.16
HDAC6-218ENST00000470942 TM4SF5O14894 197 aa16.06■□□□□ 0.16
HDAC6-218ENST00000470942 BCAT2O15382 392 aaPredicted RBP16.06■□□□□ 0.16
HDAC6-218ENST00000470942 SMAD6O43541 496 aaKnown RBP16.06■□□□□ 0.16
HDAC6-218ENST00000470942 GOT1P17174 413 aa16.06■□□□□ 0.16
HDAC6-218ENST00000470942 MAPKAPK2P49137 400 aa16.06■□□□□ 0.16
HDAC6-218ENST00000470942 SCAPQ12770 1279 aa16.06■□□□□ 0.16
HDAC6-218ENST00000470942 FAM46CQ5VWP2 391 aa16.06■□□□□ 0.16
HDAC6-218ENST00000470942 HGSNATQ68CP4 663 aa16.06■□□□□ 0.16
HDAC6-218ENST00000470942 RETSATQ6NUM9 610 aa16.06■□□□□ 0.16
HDAC6-218ENST00000470942 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.06■□□□□ 0.16
HDAC6-218ENST00000470942 AADATQ8N5Z0 425 aa16.06■□□□□ 0.16
HDAC6-218ENST00000470942 SYN2Q92777 582 aaPredicted RBP16.06■□□□□ 0.16
HDAC6-218ENST00000470942 TRIM11Q96F44 468 aa16.06■□□□□ 0.16
HDAC6-218ENST00000470942 CCDC114Q96M63 670 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms