RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 PTRH1Q86Y79 214 aaKnown RBP5.5□□□□□ -1.53
PTPN4-209ENST00000469511 MMAAQ8IVH4 418 aaKnown RBP5.5□□□□□ -1.53
PTPN4-209ENST00000469511 SYCP3Q8IZU3 236 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 CLEC18CQ8NCF0 446 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 DDI1Q8WTU0 396 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 HVCN1Q96D96 273 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 SMARCD1Q96GM5 515 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 SERAC1Q96JX3 654 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 LMLNQ96KR4 655 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 MRGPRX3Q96LB0 322 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 SLC46A1Q96NT5 459 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 PSMG3-AS1Q96PY0 264 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 MYOCQ99972 504 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 DPH1Q9BZG8 443 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 RSPH9Q9H1X1 276 aaPredicted RBP5.5□□□□□ -1.53
PTPN4-209ENST00000469511 FRRS1LQ9P0K9 344 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 NAGPAQ9UK23 515 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 INTS6Q9UL03 887 aaKnown RBP5.5□□□□□ -1.53
PTPN4-209ENST00000469511 SCML2Q9UQR0 700 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 MAN2B2Q9Y2E5 1009 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 KIF3AQ9Y496 699 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 PAXBP1Q9Y5B6 917 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 ENTPD2Q9Y5L3 495 aa5.5□□□□□ -1.53
PTPN4-209ENST00000469511 C2CD3Q4AC94 2353 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 A0A087X0B3 334 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 TMEM238LA0A1B0GVL6 79 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 SLC12A8A0AV02 714 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 ZNF233A6NK53 670 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 CDRT15L2A8MXV6 281 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 TTC34A8MYJ7 566 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 RNF103O00237 685 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 PDE2AO00408 941 aaPredicted RBP5.49□□□□□ -1.53
PTPN4-209ENST00000469511 TGFB1I1O43294 461 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 RNASEH2AO75792 299 aaKnown RBP5.49□□□□□ -1.53
PTPN4-209ENST00000469511 EPXP11678 715 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 TNNI1P19237 187 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 SCP2P22307 547 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 DGKAP23743 735 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 SLC8A1P32418 973 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 DRD3P35462 400 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 ARRB1P49407 418 aaPredicted RBP5.49□□□□□ -1.53
PTPN4-209ENST00000469511 KIF11P52732 1056 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 NDST1P52848 882 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 PDX1P52945 283 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 ADPRHP54922 357 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 TNNC1P63316 161 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 ATP11AP98196 1134 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 E2F1Q01094 437 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 CLCA4Q14CN2 919 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 EIF4HQ15056 248 aaKnown RBP5.49□□□□□ -1.53
PTPN4-209ENST00000469511 CST6Q15828 149 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 PERM1Q5SV97 790 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 C9orf64Q5T6V5 341 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 ZNF776Q68DI1 518 aaPredicted RBP5.49□□□□□ -1.53
PTPN4-209ENST00000469511 MCTP1Q6DN14 999 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 SPOPLQ6IQ16 392 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 RFWD3Q6PCD5 774 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 WDR49Q8IV35 697 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 FAM217AQ8IXS0 508 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 OR2T34Q8NGX1 318 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 HTR3CQ8WXA8 447 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 KLK6Q92876 244 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 ARRDC3Q96B67 414 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 CALML4Q96GE6 196 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 APOLD1Q96LR9 279 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 NOX5Q96PH1 765 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 CGRRF1Q99675 332 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 PANK2Q9BZ23 570 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 RASSF4Q9H2L5 321 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 ERVMER34-1Q9H9K5 563 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 ZFYVE1Q9HBF4 777 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 THSD1Q9NS62 852 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 COMMD8Q9NX08 183 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 SLCO3A1Q9UIG8 710 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 PPM1HQ9ULR3 514 aa5.49□□□□□ -1.53
PTPN4-209ENST00000469511 CENPEQ02224 2701 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 TBC1D3DA0A087WVF3 549 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 TBC1D3IA0A087WXS9 549 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 TBC1D3EA0A087X179 549 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 TBC1D3KA0A087X1G2 549 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 TBC1D3FA6NER0 549 aaPredicted RBP5.48□□□□□ -1.53
PTPN4-209ENST00000469511 TBC1D3LB9A6J9 549 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 TULP2O00295 520 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 LATO43561 262 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 TIMM44O43615 452 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 RTN2O75298 545 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 SMNDC1O75940 238 aaKnown RBP eCLIP5.48□□□□□ -1.53
PTPN4-209ENST00000469511 TNFSF15O95150 251 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 DLDP09622 509 aaKnown RBP5.48□□□□□ -1.53
PTPN4-209ENST00000469511 FAM163BP0C2L3 166 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 TBC1D3HP0C7X1 549 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 RNF224P0DH78 156 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 PABPC1P11940 636 aaKnown RBP5.48□□□□□ -1.53
PTPN4-209ENST00000469511 CKMT1AP12532 417 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 HGFP14210 728 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 IDEP14735 1019 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 POU3F2P20265 443 aaPredicted RBP5.48□□□□□ -1.53
PTPN4-209ENST00000469511 ALAS2P22557 587 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 SLC6A4P31645 630 aa5.48□□□□□ -1.53
PTPN4-209ENST00000469511 CHKAP35790 457 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms