RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 SLC25A13Q9UJS0 675 aa23.25■■□□□ 1.31
USP4-208ENST00000464168 VANGL2Q9ULK5 521 aa23.25■■□□□ 1.31
USP4-208ENST00000464168 ALOX15BO15296 676 aa23.24■■□□□ 1.31
USP4-208ENST00000464168 TLX3O43711 291 aaPredicted RBP23.24■■□□□ 1.31
USP4-208ENST00000464168 HSF2BPO75031 334 aa23.24■■□□□ 1.31
USP4-208ENST00000464168 USP8P40818 1118 aa23.24■■□□□ 1.31
USP4-208ENST00000464168 EIF2S3P41091 472 aaKnown RBP23.24■■□□□ 1.31
USP4-208ENST00000464168 TAS2R38P59533 333 aa23.24■■□□□ 1.31
USP4-208ENST00000464168 APBA1Q02410 837 aa23.24■■□□□ 1.31
USP4-208ENST00000464168 ILKQ13418 452 aa23.24■■□□□ 1.31
USP4-208ENST00000464168 STAT4Q14765 748 aa23.24■■□□□ 1.31
USP4-208ENST00000464168 RTP5Q14D33 572 aa23.24■■□□□ 1.31
USP4-208ENST00000464168 TRIM65Q6PJ69 517 aa23.24■■□□□ 1.31
USP4-208ENST00000464168 C14orf80Q86SX3 495 aa23.24■■□□□ 1.31
USP4-208ENST00000464168 NRSN2Q9GZP1 204 aa23.24■■□□□ 1.31
USP4-208ENST00000464168 CA5BQ9Y2D0 317 aa23.24■■□□□ 1.31
USP4-208ENST00000464168 HS3ST4Q9Y661 456 aa23.24■■□□□ 1.31
USP4-208ENST00000464168 AK5Q9Y6K8 562 aa23.24■■□□□ 1.31
USP4-208ENST00000464168 NYNRINQ9P2P1 1898 aaKnown RBP23.24■■□□□ 1.31
USP4-208ENST00000464168 C1QTNF3-AMACRE9PGA6 284 aa23.23■■□□□ 1.31
USP4-208ENST00000464168 PRAMEF26H0Y7S4 382 aa23.23■■□□□ 1.31
USP4-208ENST00000464168 MAGEC1O60732 1142 aa23.23■■□□□ 1.31
USP4-208ENST00000464168 SLC9A1P19634 815 aa23.23■■□□□ 1.31
USP4-208ENST00000464168 GGCXP38435 758 aa23.23■■□□□ 1.31
USP4-208ENST00000464168 NME3Q13232 169 aa23.23■■□□□ 1.31
USP4-208ENST00000464168 ARHGAP44Q17R89 818 aa23.23■■□□□ 1.31
USP4-208ENST00000464168 PROX2Q3B8N5 592 aa23.23■■□□□ 1.31
USP4-208ENST00000464168 SH2D3CQ8N5H7 860 aa23.23■■□□□ 1.31
USP4-208ENST00000464168 VPS28Q9UK41 221 aa23.23■■□□□ 1.31
USP4-208ENST00000464168 TBC1D30Q9Y2I9 924 aa23.23■■□□□ 1.31
USP4-208ENST00000464168 CFAP46Q8IYW2 2715 aa23.23■■□□□ 1.31
USP4-208ENST00000464168 DOCK9Q9BZ29 2069 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 TRIM38O00635 465 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 SDC3O75056 442 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 PAGE1O75459 146 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 CLDN11O75508 207 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 MT-CO1P00395 513 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 ZNF18P17022 549 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 MTA1Q13330 715 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 C5orf22Q49AR2 442 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 SETMARQ53H47 684 aaPredicted RBP23.22■■□□□ 1.31
USP4-208ENST00000464168 OLFML1Q6UWY5 402 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 C11orf57Q6ZUT1 292 aaPredicted RBP23.22■■□□□ 1.31
USP4-208ENST00000464168 FAM183BPQ6ZVS7 135 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 PASD1Q8IV76 773 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 SLC25A45Q8N413 288 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 RFFLQ8WZ73 363 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 SHC3Q92529 594 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 FAM81BQ96LP2 452 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 PREBQ9HCU5 417 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 PCDHGC3Q9UN70 934 aa23.22■■□□□ 1.31
USP4-208ENST00000464168 SETXQ7Z333 2677 aaKnown RBP23.22■■□□□ 1.31
USP4-208ENST00000464168 EIF4E1BA6NMX2 242 aaKnown RBP23.21■■□□□ 1.31
USP4-208ENST00000464168 SIGLEC6O43699 453 aa23.21■■□□□ 1.31
USP4-208ENST00000464168 BNIP3LO60238 219 aa23.21■■□□□ 1.31
USP4-208ENST00000464168 CTSLP07711 333 aa23.21■■□□□ 1.31
USP4-208ENST00000464168 ACP1P24666 158 aa23.21■■□□□ 1.31
USP4-208ENST00000464168 PIP5KL1Q5T9C9 394 aa23.21■■□□□ 1.31
USP4-208ENST00000464168 OR6B2Q6IFH4 312 aa23.21■■□□□ 1.31
USP4-208ENST00000464168 CACTIN-AS1Q8N1I8 211 aa23.21■■□□□ 1.31
USP4-208ENST00000464168 TMEM145Q8NBT3 493 aa23.21■■□□□ 1.31
USP4-208ENST00000464168 KLHDC7BQ96G42 594 aa23.21■■□□□ 1.31
USP4-208ENST00000464168 APEX2Q9UBZ4 518 aa23.21■■□□□ 1.31
USP4-208ENST00000464168 HS3ST2Q9Y278 367 aa23.21■■□□□ 1.31
USP4-208ENST00000464168 FLNBO75369 2602 aaKnown RBP23.21■■□□□ 1.31
USP4-208ENST00000464168 RNGTTO60942 597 aaKnown RBP23.2■■□□□ 1.3
USP4-208ENST00000464168 CNTN5O94779 1100 aa23.2■■□□□ 1.3
USP4-208ENST00000464168 FGFR1OPO95684 399 aaKnown RBP23.2■■□□□ 1.3
USP4-208ENST00000464168 ERBB2P04626 1255 aa23.2■■□□□ 1.3
USP4-208ENST00000464168 SRCP12931 536 aa23.2■■□□□ 1.3
USP4-208ENST00000464168 CDH4P55283 916 aa23.2■■□□□ 1.3
USP4-208ENST00000464168 INSM1Q01101 510 aaPredicted RBP23.2■■□□□ 1.3
USP4-208ENST00000464168 ZNF211Q13398 564 aaPredicted RBP23.2■■□□□ 1.3
USP4-208ENST00000464168 OTUD1Q5VV17 481 aaPredicted RBP23.2■■□□□ 1.3
USP4-208ENST00000464168 PSMB7Q99436 277 aa23.2■■□□□ 1.3
USP4-208ENST00000464168 SIK2Q9H0K1 926 aa23.2■■□□□ 1.3
USP4-208ENST00000464168 MUC3BQ9H195 1237 aa23.2■■□□□ 1.3
USP4-208ENST00000464168 RAI2Q9Y5P3 530 aa23.2■■□□□ 1.3
USP4-208ENST00000464168 MGAQ8IWI9 3026 aa23.19■■□□□ 1.3
USP4-208ENST00000464168 M0QYT0 321 aa23.19■■□□□ 1.3
USP4-208ENST00000464168 SLC31A1O15431 190 aa23.19■■□□□ 1.3
USP4-208ENST00000464168 SNAP91O60641 907 aa23.19■■□□□ 1.3
USP4-208ENST00000464168 ADCY5O95622 1261 aa23.19■■□□□ 1.3
USP4-208ENST00000464168 PRLRP16471 622 aa23.19■■□□□ 1.3
USP4-208ENST00000464168 NOS2P35228 1153 aa23.19■■□□□ 1.3
USP4-208ENST00000464168 SLC6A3Q01959 620 aa23.19■■□□□ 1.3
USP4-208ENST00000464168 SLC26A9Q7LBE3 791 aa23.19■■□□□ 1.3
USP4-208ENST00000464168 DCBLD1Q8N8Z6 715 aa23.19■■□□□ 1.3
USP4-208ENST00000464168 C1orf131Q8NDD1 294 aaKnown RBP23.19■■□□□ 1.3
USP4-208ENST00000464168 OR2A12Q8NGT7 310 aa23.19■■□□□ 1.3
USP4-208ENST00000464168 KLK6Q92876 244 aa23.19■■□□□ 1.3
USP4-208ENST00000464168 UBL7Q96S82 380 aaPredicted RBP23.19■■□□□ 1.3
USP4-208ENST00000464168 MYOCQ99972 504 aa23.19■■□□□ 1.3
USP4-208ENST00000464168 PRORYQ9H606 182 aa23.19■■□□□ 1.3
USP4-208ENST00000464168 ANLNQ9NQW6 1124 aa23.19■■□□□ 1.3
USP4-208ENST00000464168 PIGVQ9NUD9 493 aa23.19■■□□□ 1.3
USP4-208ENST00000464168 MYLKQ15746 1914 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 A0A1W2PQU0 124 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 I6L893 689 aaPredicted RBP23.18■■□□□ 1.3
USP4-208ENST00000464168 K7ERQ8 282 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms