RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	UCKL1	Q9NWZ5	548 aa		11.48	□□□□□ -0.57
PTPN7-204	ENST00000462815	TBC1D30	Q9Y2I9	924 aa		11.48	□□□□□ -0.57
PTPN7-204	ENST00000462815	HS3ST4	Q9Y661	456 aa		11.48	□□□□□ -0.57
PTPN7-204	ENST00000462815		U3KQA8	63 aa		11.48	□□□□□ -0.57
PTPN7-204	ENST00000462815	BOD1L1	Q8NFC6	3051 aa		11.48	□□□□□ -0.57
PTPN7-204	ENST00000462815	CAPN9	O14815	690 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	SIGLEC6	O43699	453 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	SDC3	O75056	442 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	MT-CO1	P00395	513 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	GLI1	P08151	1106 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	SRC	P12931	536 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	GGCX	P38435	758 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	APBA1	Q02410	837 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	TLE3	Q04726	772 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	ZNF211	Q13398	564 aa	Predicted RBP	11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	AUH	Q13825	339 aa	Known RBP	11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	MORC3	Q14149	939 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	DLG2	Q15700	870 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	ZNF284	Q2VY69	593 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	SLC45A4	Q5BKX6	768 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	GJB7	Q6PEY0	223 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	OLFML1	Q6UWY5	402 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	PRPF39	Q86UA1	669 aa	Known RBP	11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	CCDC117	Q8IWD4	279 aa	Predicted RBP	11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	DEFB106A	Q8N104	65 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	SLC22A18AS	Q8N1D0	253 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	ATP6V0D2	Q8N8Y2	350 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	NELFB	Q8WX92	580 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	OR8D1	Q8WZ84	308 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	CCDC34	Q96HJ3	373 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	MED15	Q96RN5	788 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	PREB	Q9HCU5	417 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	AJAP1	Q9UKB5	411 aa	Predicted RBP	11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	HS3ST2	Q9Y278	367 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	CEP83	Q9Y592	693 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	BSN	Q9UPA5	3926 aa		11.47	□□□□□ -0.57
PTPN7-204	ENST00000462815	PRAMEF26	H0Y7S4	382 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	LZTS3	O60299	673 aa	Predicted RBP	11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	ZNF821	O75541	412 aa	Predicted RBP	11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	CNTN5	O94779	1100 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	LETM1	O95202	739 aa	Predicted RBP	11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	AFP	P02771	609 aa	Known RBP	11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	KRT5	P13647	590 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	DGKA	P23743	735 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	GNA15	P30679	374 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	CCR1	P32246	355 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	TBC1D25	Q3MII6	688 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	POM121L1P	Q3SYA9	428 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	RABGAP1L	Q5R372	815 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	GCNT7	Q6ZNI0	430 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	FAM183BP	Q6ZVS7	135 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	LSM14A	Q8ND56	463 aa	Known RBP	11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	OR2A12	Q8NGT7	310 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	OR4C6	Q8NH72	309 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	SLC39A7	Q92504	469 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	VOPP1	Q96AW1	172 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	ARRDC3	Q96B67	414 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	HIC2	Q96JB3	615 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	FCRL3	Q96P31	734 aa	Predicted RBP	11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	NOX5	Q96PH1	765 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	UBE2T	Q9NPD8	197 aa	Predicted RBP	11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	DDIT4	Q9NX09	232 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	ZNF212	Q9UDV6	495 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	VANGL2	Q9ULK5	521 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	PCDHGC3	Q9UN70	934 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	ZFR2	Q9UPR6	939 aa	Known RBP	11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	CTNND2	Q9UQB3	1225 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	CLCA2	Q9UQC9	943 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	PCDHB1	Q9Y5F3	818 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815	AK5	Q9Y6K8	562 aa		11.46	□□□□□ -0.57
PTPN7-204	ENST00000462815		K7ERQ8	282 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	THAP12	O43422	761 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	MED7	O43513	233 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	SNAP91	O60641	907 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	RNGTT	O60942	597 aa	Known RBP	11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	HSF2BP	O75031	334 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	DAB1	O75553	588 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	ERBB2	P04626	1255 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	SLC2A3	P11169	496 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	CKMT1A	P12532	417 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	PRLR	P16471	622 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	TFE3	P19532	575 aa	Predicted RBP	11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	GLDC	P23378	1020 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	NNMT	P40261	264 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	PPP1R2	P41236	205 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	OXCT1	P55809	520 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	C19orf57	Q0VDD7	668 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	KCNMA1	Q12791	1236 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	CETN1	Q12798	172 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	STIM1	Q13586	685 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	TMEM259	Q4ZIN3	620 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	SETMAR	Q53H47	684 aa	Predicted RBP	11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	ALF	Q53S48	1182 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	FAM46C	Q5VWP2	391 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	KLHL10	Q6JEL2	608 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	DPY19L2P1	Q6NXN4	242 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	TRIM65	Q6PJ69	517 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	ABI3BP	Q7Z7G0	1075 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	DSG4	Q86SJ6	1040 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	SPACA3	Q8IXA5	215 aa		11.45	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms