RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 BNIP3LO60238 219 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 TOP3BO95985 862 aaKnown RBP14.31□□□□□ -0.12
USP4-206ENST00000461553 CYP1A1P04798 512 aaPredicted RBP14.31□□□□□ -0.12
USP4-206ENST00000461553 CDK11BP21127 795 aaKnown RBP14.31□□□□□ -0.12
USP4-206ENST00000461553 OR1E1P30953 314 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 SDC4P31431 198 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 NSFP46459 744 aaKnown RBP14.31□□□□□ -0.12
USP4-206ENST00000461553 FAM193AP78312 1265 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 ATP11AP98196 1134 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 UBXN1Q04323 297 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 SUZ12Q15022 739 aaKnown RBP14.31□□□□□ -0.12
USP4-206ENST00000461553 DLG2Q15700 870 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 CDO1Q16878 200 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 INAVAQ3KP66 663 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 TRNP1Q6NT89 227 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 FAM131BQ86XD5 332 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 ZNF683Q8IZ20 524 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 EMC1Q8N766 993 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 C1orf74Q96LT6 269 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 ORAI3Q9BRQ5 295 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 AASDHPPTQ9NRN7 309 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 TMPRSS4Q9NRS4 437 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 SEPT11Q9NVA2 429 aaKnown RBP14.31□□□□□ -0.12
USP4-206ENST00000461553 LIMA1Q9UHB6 759 aaKnown RBP14.31□□□□□ -0.12
USP4-206ENST00000461553 VPS51Q9UID3 782 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 TMEM59LQ9UK28 342 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 PCOLCE2Q9UKZ9 415 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 WASF3Q9UPY6 502 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 HS3ST2Q9Y278 367 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 FARP1Q9Y4F1 1045 aaPredicted RBP14.31□□□□□ -0.12
USP4-206ENST00000461553 NEUROG3Q9Y4Z2 214 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 OR51B4Q9Y5P0 310 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 SNX11Q9Y5W9 270 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 COL5A1P20908 1838 aaPredicted RBP14.31□□□□□ -0.12
USP4-206ENST00000461553 GOLGA4Q13439 2230 aaKnown RBP14.3□□□□□ -0.12
USP4-206ENST00000461553 IGLV3-10A0A075B6K4 115 aa14.3□□□□□ -0.12
USP4-206ENST00000461553 SRGAP2O75044 1071 aa14.3□□□□□ -0.12
USP4-206ENST00000461553 FTH1P19P0C7X4 201 aa14.3□□□□□ -0.12
USP4-206ENST00000461553 SRCP12931 536 aa14.3□□□□□ -0.12
USP4-206ENST00000461553 MMP8P22894 467 aa14.3□□□□□ -0.12
USP4-206ENST00000461553 DRD3P35462 400 aa14.3□□□□□ -0.12
USP4-206ENST00000461553 CCR5P51681 352 aa14.3□□□□□ -0.12
USP4-206ENST00000461553 CLCN6P51797 869 aa14.3□□□□□ -0.12
USP4-206ENST00000461553 ARL13BQ3SXY8 428 aa14.3□□□□□ -0.12
USP4-206ENST00000461553 SLC45A4Q5BKX6 768 aa14.3□□□□□ -0.12
USP4-206ENST00000461553 BNIPLQ7Z465 357 aa14.3□□□□□ -0.12
USP4-206ENST00000461553 ATP11CQ8NB49 1132 aa14.3□□□□□ -0.12
USP4-206ENST00000461553 PIP4K2CQ8TBX8 421 aa14.3□□□□□ -0.12
USP4-206ENST00000461553 HAPLN3Q96S86 360 aa14.3□□□□□ -0.12
USP4-206ENST00000461553 PSMB7Q99436 277 aa14.3□□□□□ -0.12
USP4-206ENST00000461553 ZYG11BQ9C0D3 744 aa14.3□□□□□ -0.12
USP4-206ENST00000461553 MPP6Q9NZW5 540 aa14.3□□□□□ -0.12
USP4-206ENST00000461553 APOBEC2Q9Y235 224 aaKnown RBP14.3□□□□□ -0.12
USP4-206ENST00000461553 TBC1D3DA0A087WVF3 549 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 TBC1D3IA0A087WXS9 549 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 TBC1D3EA0A087X179 549 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 TBC1D3KA0A087X1G2 549 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 TBC1D3FA6NER0 549 aaPredicted RBP14.29□□□□□ -0.12
USP4-206ENST00000461553 DRGXA6NNA5 263 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 C1QTNF9BB2RNN3 333 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 TBC1D3LB9A6J9 549 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 MCF2LO15068 1137 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 VILLO15195 856 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 PLRG1O43660 514 aaKnown RBP14.29□□□□□ -0.12
USP4-206ENST00000461553 SNAP91O60641 907 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 PROS1P07225 676 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 TBC1D3HP0C7X1 549 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 C1QTNF9P0C862 333 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 CHRNB2P17787 502 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 CTSKP43235 329 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 METAP1P53582 386 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 GSCP56915 257 aaPredicted RBP14.29□□□□□ -0.12
USP4-206ENST00000461553 PPP2CBP62714 309 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 PPP2CAP67775 309 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 POM121L1PQ3SYA9 428 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 TBC1D3GQ6DHY5 549 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 TBC1D3CQ6IPX1 549 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 C22orf39Q6P5X5 142 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.29□□□□□ -0.12
USP4-206ENST00000461553 ZNF783Q6ZMS7 281 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 TBC1D3Q8IZP1 549 aaPredicted RBP14.29□□□□□ -0.12
USP4-206ENST00000461553 AOPEPQ8N6M6 819 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 SLC30A5Q8TAD4 765 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 ERGIC2Q96RQ1 377 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 SELENOOQ9BVL4 669 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 NAT10Q9H0A0 1025 aaKnown RBP14.29□□□□□ -0.12
USP4-206ENST00000461553 KDM4CQ9H3R0 1056 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 PLXNB3Q9ULL4 1909 aa14.29□□□□□ -0.12
USP4-206ENST00000461553 TDRD6O60522 2096 aaKnown RBP14.29□□□□□ -0.12
USP4-206ENST00000461553 A0A0D9SEW6 157 aa14.28□□□□□ -0.12
USP4-206ENST00000461553 ILVBLA1L0T0 632 aa14.28□□□□□ -0.12
USP4-206ENST00000461553 TMEM8BA6NDV4 472 aa14.28□□□□□ -0.12
USP4-206ENST00000461553 H0Y8X5 98 aa14.28□□□□□ -0.12
USP4-206ENST00000461553 PLK4O00444 970 aa14.28□□□□□ -0.12
USP4-206ENST00000461553 DFNA5O60443 496 aa14.28□□□□□ -0.12
USP4-206ENST00000461553 CBFA2T3O75081 653 aa14.28□□□□□ -0.12
USP4-206ENST00000461553 RTN2O75298 545 aa14.28□□□□□ -0.12
USP4-206ENST00000461553 CALB1P05937 261 aa14.28□□□□□ -0.12
USP4-206ENST00000461553 UNGP13051 313 aaPredicted RBP14.28□□□□□ -0.12
USP4-206ENST00000461553 RRM1P23921 792 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms