RNA–Protein interactions for RNA: ENST00000460940.5

APTX-209, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,874 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-209	ENST00000460940	CRY1	Q16526	586 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	DPYSL2	Q16555	572 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	EMC10	Q5UCC4	262 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	TFAP2D	Q7Z6R9	452 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	NLRP14	Q86W24	1093 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	PYROXD2	Q8N2H3	581 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	CCDC33	Q8N5R6	958 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	GIMAP7	Q8NHV1	300 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	FEM1A	Q9BSK4	669 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	C2orf49	Q9BVC5	232 aa	Predicted RBP	11.36	□□□□□ -0.59
APTX-209	ENST00000460940	MUC3B	Q9H195	1237 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	CDC23	Q9UJX2	597 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	INTS6	Q9UL03	887 aa	Known RBP	11.36	□□□□□ -0.59
APTX-209	ENST00000460940	OR51B4	Q9Y5P0	310 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	CACNA1I	Q9P0X4	2223 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	CCDC163	A0A0D9SF12	145 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	BTNL10	A8MVZ5	291 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	WASH4P	A8MWX3	477 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	EEF2K	O00418	725 aa	Known RBP	11.36	□□□□□ -0.59
APTX-209	ENST00000460940	CREB3	O43889	395 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	ALDH1A2	O94788	518 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	KRT7	P08729	469 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	SP9	P0CG40	484 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	HOXB2	P14652	356 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	IL1R2	P27930	398 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	SLC1A1	P43005	524 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	HCAR3	P49019	387 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	VASP	P50552	380 aa	Predicted RBP	11.36	□□□□□ -0.59
APTX-209	ENST00000460940	VAV2	P52735	878 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	TCF15	Q12870	199 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	ZNF234	Q14588	700 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	STARD3	Q14849	445 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	MAP9	Q49MG5	647 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	FNDC3B	Q53EP0	1204 aa	Known RBP	11.36	□□□□□ -0.59
APTX-209	ENST00000460940	RNF219	Q5W0B1	726 aa	Predicted RBP	11.36	□□□□□ -0.59
APTX-209	ENST00000460940	POLN	Q7Z5Q5	900 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	RTL3	Q8N8U3	475 aa	Known RBP	11.36	□□□□□ -0.59
APTX-209	ENST00000460940	DCAF4L2	Q8NA75	395 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	TSTD1	Q8NFU3	115 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	NELL1	Q92832	810 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	KCTD15	Q96SI1	283 aa	Predicted RBP	11.36	□□□□□ -0.59
APTX-209	ENST00000460940	ZWILCH	Q9H900	591 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	POLM	Q9NP87	494 aa	Predicted RBP	11.36	□□□□□ -0.59
APTX-209	ENST00000460940	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	11.36	□□□□□ -0.59
APTX-209	ENST00000460940	GPATCH2L	Q9NWQ4	482 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	C2orf42	Q9NWW7	574 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	CACNA2D2	Q9NY47	1150 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	RCOR3	Q9P2K3	495 aa	Predicted RBP	11.36	□□□□□ -0.59
APTX-209	ENST00000460940	MCM8	Q9UJA3	840 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	VPS28	Q9UK41	221 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	STON1	Q9Y6Q2	735 aa		11.36	□□□□□ -0.59
APTX-209	ENST00000460940	MUC22	E2RYF6	1773 aa	Predicted RBP	11.35	□□□□□ -0.59
APTX-209	ENST00000460940	CXorf51A	A0A1B0GTR3	108 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940		H3BRJ5	948 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	EBAG9	O00559	213 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	PJA2	O43164	708 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	RARA	P10276	462 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	MZF1	P28698	734 aa	Predicted RBP	11.35	□□□□□ -0.59
APTX-209	ENST00000460940	IL12RB1	P42701	662 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	SSR1	P43307	286 aa	Known RBP	11.35	□□□□□ -0.59
APTX-209	ENST00000460940	ST8SIA6	P61647	398 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	ECT2L	Q008S8	904 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	GNA12	Q03113	381 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	MESD	Q14696	234 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	CA9	Q16790	459 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	PTPRN	Q16849	979 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	DAB2IP	Q5VWQ8	1189 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	WDR93	Q6P2C0	686 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	ZC3H14	Q6PJT7	736 aa	Known RBP	11.35	□□□□□ -0.59
APTX-209	ENST00000460940	SERPINA13P	Q6UXR4	307 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	RFX8	Q6ZV50	586 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	KIAA1328	Q86T90	577 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	APCDD1	Q8J025	514 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	CYB5D2	Q8WUJ1	264 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	SORCS1	Q8WY21	1168 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	ALG14	Q96F25	216 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	CABS1	Q96KC9	395 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	ACOX2	Q99424	681 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	FBRS	Q9HAH7	460 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	REXO2	Q9Y3B8	237 aa	Known RBP	11.35	□□□□□ -0.59
APTX-209	ENST00000460940	PCDHGA2	Q9Y5H1	932 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	FAM169A	Q9Y6X4	670 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	DOCK4	Q8N1I0	1966 aa		11.35	□□□□□ -0.59
APTX-209	ENST00000460940	ANTXRL	A6NF34	631 aa		11.34	□□□□□ -0.59
APTX-209	ENST00000460940	TMEM110-MUSTN1	A8MSY1	372 aa		11.34	□□□□□ -0.59
APTX-209	ENST00000460940	ZBTB24	O43167	697 aa	Predicted RBP	11.34	□□□□□ -0.59
APTX-209	ENST00000460940	RAMP2	O60895	175 aa		11.34	□□□□□ -0.59
APTX-209	ENST00000460940	TCF4	P15884	667 aa		11.34	□□□□□ -0.59
APTX-209	ENST00000460940	COL9A1	P20849	921 aa		11.34	□□□□□ -0.59
APTX-209	ENST00000460940	MCM3	P25205	808 aa		11.34	□□□□□ -0.59
APTX-209	ENST00000460940	ARL4A	P40617	200 aa		11.34	□□□□□ -0.59
APTX-209	ENST00000460940	IRX1	P78414	480 aa	Predicted RBP	11.34	□□□□□ -0.59
APTX-209	ENST00000460940	SMTNL2	Q2TAL5	461 aa		11.34	□□□□□ -0.59
APTX-209	ENST00000460940	PPP6R3	Q5H9R7	873 aa	Predicted RBP	11.34	□□□□□ -0.59
APTX-209	ENST00000460940	KCNT1	Q5JUK3	1230 aa		11.34	□□□□□ -0.59
APTX-209	ENST00000460940	LRRC38	Q5VT99	294 aa		11.34	□□□□□ -0.59
APTX-209	ENST00000460940	C11orf63	Q6NUN7	778 aa		11.34	□□□□□ -0.59
APTX-209	ENST00000460940	SPATS2	Q86XZ4	545 aa	Known RBP	11.34	□□□□□ -0.59
APTX-209	ENST00000460940	OTUD6B	Q8N6M0	293 aa		11.34	□□□□□ -0.59
APTX-209	ENST00000460940	ACRBP	Q8NEB7	543 aa		11.34	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms