RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 RIPK1Q13546 671 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 CTXN3Q4LDR2 81 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 SPDYAQ5MJ70 313 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 AGAP9Q5VTM2 703 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 TMC7Q7Z402 723 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 TMEM86AQ8N2M4 240 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 C10orf82Q8WW14 230 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 COLEC11Q9BWP8 271 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 SLC4A5Q9BY07 1137 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 UBE2OQ9C0C9 1292 aaKnown RBP11.85□□□□□ -0.51
NPHP4-204ENST00000460696 RRN3Q9NYV6 651 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 MFHAS1Q9Y4C4 1052 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 CCNB1P14635 433 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 TPSB2P20231 275 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 CLCNKBP51801 687 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 MAXP61244 160 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 TPSAB1Q15661 275 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 ISLR2Q6UXK2 745 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 SNX32Q86XE0 403 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 SLC35F5Q8WV83 523 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 EME1Q96AY2 570 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 MARK4Q96L34 752 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 QKIQ96PU8 341 aaKnown RBP eCLIP11.85□□□□□ -0.51
NPHP4-204ENST00000460696 IL22Q9GZX6 179 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 CNGB3Q9NQW8 809 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 ARHGEF3Q9NR81 526 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 MPP6Q9NZW5 540 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 MSI1O43347 362 aaKnown RBP11.84□□□□□ -0.51
NPHP4-204ENST00000460696 TPST1O60507 370 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 C2P06681 752 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 ACADSP16219 412 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 PTPN7P35236 360 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 MRPS6P82932 125 aaKnown RBP11.84□□□□□ -0.51
NPHP4-204ENST00000460696 IL1RL1Q01638 556 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 VWA5B1Q5TIE3 1220 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 OTOP3Q7RTS5 596 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 SLC41A1Q8IVJ1 513 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 TOP6BLQ8N6T0 577 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 FGD4Q96M96 766 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 TEX264Q9Y6I9 313 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 CACNA1GO43497 2377 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 SCN9AQ15858 1988 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 TSPAN3O60637 253 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 GCATO75600 419 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 MPOP05164 745 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 DSG1Q02413 1049 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 CCDC15Q0P6D6 951 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 OLIG2Q13516 323 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 CYLC2Q14093 348 aaPredicted RBP11.84□□□□□ -0.51
NPHP4-204ENST00000460696 CCDC142Q17RM4 750 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 TIGD7Q6NT04 549 aaPredicted RBP11.84□□□□□ -0.51
NPHP4-204ENST00000460696 REM2Q8IYK8 340 aaPredicted RBP11.84□□□□□ -0.51
NPHP4-204ENST00000460696 NUP93Q8N1F7 819 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 PQLC3Q8N755 202 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 ATP6V0D2Q8N8Y2 350 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 CDC26Q8NHZ8 85 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 MIPOL1Q8TD10 442 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 KCTD4Q8WVF5 259 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 ACE2Q9BYF1 805 aaPredicted RBP11.84□□□□□ -0.51
NPHP4-204ENST00000460696 MCOLN1Q9GZU1 580 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 NDFIP2Q9NV92 336 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 ZNF358Q9NW07 568 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 CDK5RAP2Q96SN8 1893 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 IGKV6-21A0A0C4DH24 114 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 SUPT3HB4E1H0 165 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 SPTLC1O15269 473 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 SUPT3HO75486 399 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 MAPRE2Q15555 327 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 DPYSL2Q16555 572 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 LRRC8BQ6P9F7 803 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 LCA5Q86VQ0 697 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 RBM15BQ8NDT2 890 aaKnown RBP11.84□□□□□ -0.51
NPHP4-204ENST00000460696 TRIB2Q92519 343 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 PCED1BQ96HM7 432 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 VAT1Q99536 393 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 EGFL8Q99944 293 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 EFCAB1Q9HAE3 211 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 FAM8A1Q9UBU6 413 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 CDH9Q9ULB4 789 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 CRYL1Q9Y2S2 319 aa11.84□□□□□ -0.51
NPHP4-204ENST00000460696 NCF1BA6NI72 391 aaPredicted RBP11.83□□□□□ -0.52
NPHP4-204ENST00000460696 NCF1CA8MVU1 366 aaPredicted RBP11.83□□□□□ -0.52
NPHP4-204ENST00000460696 ANGPT2O15123 496 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 SH3BP5O60239 455 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 RHOBTB1O94844 696 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 OR4Q2P0C623 313 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 SLC2A3P11169 496 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 NCF1P14598 390 aaPredicted RBP11.83□□□□□ -0.52
NPHP4-204ENST00000460696 EPHA3P29320 983 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 CRHR1P34998 444 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 PKNOX1P55347 436 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 ITGA7Q13683 1181 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 KCNJ11Q14654 390 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 NEPROQ6NW34 567 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 HFE2Q6ZVN8 426 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 ARCQ7LC44 396 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 SPATA22Q8NHS9 363 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 GPR152Q8TDT2 470 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 TBL1YQ9BQ87 522 aa11.83□□□□□ -0.52
NPHP4-204ENST00000460696 PIDD1Q9HB75 910 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms