RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 C2CD4BA6NLJ0 364 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 MATN2O00339 956 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 AKAP10O43572 662 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 PSME3P61289 254 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 TRAF2Q12933 501 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 ITGADQ13349 1161 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 CAPSQ13938 189 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 DUOXA2Q1HG44 320 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 FAM160B2Q86V87 743 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 CROCCP3Q8IVE0 287 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 BRSK2Q8IWQ3 736 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 SCUBE3Q8IX30 993 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 MCUQ8NE86 351 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 MAF1Q9H063 256 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 ILKAPQ9H0C8 392 aaPredicted RBP11.92□□□□□ -0.5
CPSF3-202ENST00000460593 IL1RL2Q9HB29 575 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 SMOXQ9NWM0 555 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 ZNHIT2Q9UHR6 403 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 AURKCQ9UQB9 309 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 PTPRFP10586 1907 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 BCLAF3A2AJT9 711 aaKnown RBP11.92□□□□□ -0.5
CPSF3-202ENST00000460593 A8MU76 341 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 C9JVG2 144 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 TRIM13O60858 407 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 CBFA2T3O75081 653 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 NR3C2P08235 984 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 CCDC130P13994 396 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 PSMB4P28070 264 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 BMXP51813 675 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 ADRM1Q16186 407 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 DGKDQ16760 1214 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 MAP1SQ66K74 1059 aaPredicted RBP11.92□□□□□ -0.5
CPSF3-202ENST00000460593 DHRS4L2Q6PKH6 230 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 BTLAQ7Z6A9 289 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 RAVER1Q8IY67 606 aaKnown RBP11.92□□□□□ -0.5
CPSF3-202ENST00000460593 SLC15A4Q8N697 577 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 COLGALT1Q8NBJ5 622 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 ZNF669Q96BR6 464 aaPredicted RBP11.92□□□□□ -0.5
CPSF3-202ENST00000460593 LRRC39Q96DD0 335 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 RTP4Q96DX8 246 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 MCRS1Q96EZ8 462 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 SCYL1Q96KG9 808 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 CNPY3Q9BT09 278 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 OSBPL11Q9BXB4 747 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 PADI4Q9UM07 663 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 TLL2Q9Y6L7 1015 aa11.92□□□□□ -0.5
CPSF3-202ENST00000460593 B4GAT1O43505 415 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 C2P06681 752 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 KCNA2P16389 499 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 GRIA3P42263 894 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 GPD2P43304 727 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 SP2Q02086 613 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 CREB5Q02930 508 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 HEATR6Q6AI08 1181 aaKnown RBP11.91□□□□□ -0.5
CPSF3-202ENST00000460593 LRRC8EQ6NSJ5 796 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 ZC3H7AQ8IWR0 971 aaKnown RBP11.91□□□□□ -0.5
CPSF3-202ENST00000460593 CBR4Q8N4T8 237 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 DDHD1Q8NEL9 900 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 OR9I1Q8NGQ6 314 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 CYGBQ8WWM9 190 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 APBB2Q92870 758 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 GFM2Q969S9 779 aaKnown RBP11.91□□□□□ -0.5
CPSF3-202ENST00000460593 SLC45A3Q96JT2 553 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 TASP1Q9H6P5 420 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 POLR1BQ9H9Y6 1135 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 EFCAB1Q9HAE3 211 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 JPH1Q9HDC5 661 aaPredicted RBP11.91□□□□□ -0.5
CPSF3-202ENST00000460593 CCDC167Q9P0B6 97 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 PCDHGA7Q9Y5G6 932 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 HDAC3O15379 428 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 PSAPP07602 524 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 HMOX2P30519 316 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 TMED10P49755 219 aaKnown RBP11.91□□□□□ -0.5
CPSF3-202ENST00000460593 NME5P56597 212 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 ESRRGP62508 458 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 CNTN2Q02246 1040 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 PRKCQQ04759 706 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 PTPN11Q06124 597 aaPredicted RBP11.91□□□□□ -0.5
CPSF3-202ENST00000460593 NR1D2Q14995 579 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 KIZQ2M2Z5 673 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 PDCD4Q53EL6 469 aaKnown RBP11.91□□□□□ -0.5
CPSF3-202ENST00000460593 C6orf183Q5T699 404 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 SLFN12LQ6IEE8 588 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 STYK1Q6J9G0 422 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 UTS2BQ765I0 119 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 OR52K1Q8NGK4 314 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 ACMSDQ8TDX5 336 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 CLEC4CQ8WTT0 213 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 CANT1Q8WVQ1 401 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 PPP1R16BQ96T49 567 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 PRDM16Q9HAZ2 1276 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 NMRAL1Q9HBL8 299 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 SLC39A10Q9ULF5 831 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 TSC22D4Q9Y3Q8 395 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 SCN9AQ15858 1988 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 AHDC1Q5TGY3 1603 aaPredicted RBP11.91□□□□□ -0.5
CPSF3-202ENST00000460593 SYNJ2BP-COX16A0A087WUM0 186 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 C1orf232A0A0U1RR37 186 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 GPR25O00155 361 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 B4GALT5O43286 388 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms