RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 CCP110O43303 1012 aa23.56■■□□□ 1.36
PTPN4-208ENST00000460289 RNASEH2AO75792 299 aaKnown RBP23.56■■□□□ 1.36
PTPN4-208ENST00000460289 IL1BP01584 269 aa23.56■■□□□ 1.36
PTPN4-208ENST00000460289 PLEKP08567 350 aaPredicted RBP23.56■■□□□ 1.36
PTPN4-208ENST00000460289 PSMD8P48556 350 aa23.56■■□□□ 1.36
PTPN4-208ENST00000460289 AIF1P55008 147 aa23.56■■□□□ 1.36
PTPN4-208ENST00000460289 SCAPQ12770 1279 aa23.56■■□□□ 1.36
PTPN4-208ENST00000460289 PPM1JQ5JR12 505 aa23.56■■□□□ 1.36
PTPN4-208ENST00000460289 RWDD4Q6NW29 188 aaKnown RBP23.56■■□□□ 1.36
PTPN4-208ENST00000460289 SCYL2Q6P3W7 929 aa23.56■■□□□ 1.36
PTPN4-208ENST00000460289 CCDC185Q8N715 623 aa23.56■■□□□ 1.36
PTPN4-208ENST00000460289 SYN2Q92777 582 aaPredicted RBP23.56■■□□□ 1.36
PTPN4-208ENST00000460289 ZNF212Q9UDV6 495 aa23.56■■□□□ 1.36
PTPN4-208ENST00000460289 ADAMTS1Q9UHI8 967 aa23.56■■□□□ 1.36
PTPN4-208ENST00000460289 VPS51Q9UID3 782 aa23.56■■□□□ 1.36
PTPN4-208ENST00000460289 ZBTB32Q9Y2Y4 487 aaPredicted RBP23.56■■□□□ 1.36
PTPN4-208ENST00000460289 FARP1Q9Y4F1 1045 aaPredicted RBP23.56■■□□□ 1.36
PTPN4-208ENST00000460289 PI4KAP42356 2102 aa23.56■■□□□ 1.36
PTPN4-208ENST00000460289 A0A1W2PP55 124 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 MCF2LO15068 1137 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 ALOX15BO15296 676 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 BCAT2O15382 392 aaPredicted RBP23.55■■□□□ 1.36
PTPN4-208ENST00000460289 SNAP91O60641 907 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 FTLP02792 175 aaPredicted RBP23.55■■□□□ 1.36
PTPN4-208ENST00000460289 TPM3P06753 285 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 SRCP12931 536 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 VAV1P15498 845 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 RHOQP17081 205 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 GOT1P17174 413 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 ETFBP38117 255 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 MAPK8P45983 427 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 MAPKAPK2P49137 400 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 CLCN6P51797 869 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 SLC20A2Q08357 652 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 MAMLD1Q13495 774 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 MANEALQ5VSG8 457 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 FAM46CQ5VWP2 391 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 E4F1Q66K89 784 aaPredicted RBP23.55■■□□□ 1.36
PTPN4-208ENST00000460289 PLEKHA7Q6IQ23 1121 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 RETSATQ6NUM9 610 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 TBC1D31Q96DN5 1066 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 CCDC114Q96M63 670 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 SPON2Q9BUD6 331 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 GTPBP2Q9BX10 602 aaKnown RBP23.55■■□□□ 1.36
PTPN4-208ENST00000460289 NEUROG2Q9H2A3 272 aa23.55■■□□□ 1.36
PTPN4-208ENST00000460289 EIF2B4Q9UI10 523 aaKnown RBP23.55■■□□□ 1.36
PTPN4-208ENST00000460289 MED19A0JLT2 244 aaPredicted RBP23.54■■□□□ 1.36
PTPN4-208ENST00000460289 LRRC72A6NJI9 287 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 CBX4O00257 560 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 RTN2O75298 545 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 LRIG2O94898 1065 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 MT-CO1P00395 513 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 SKILP12757 684 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 GNA12Q03113 381 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 UAP1L1Q3KQV9 507 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 EFHC2Q5JST6 749 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 DRC7Q8IY82 874 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 HDDC3Q8N4P3 179 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 ZCCHC9Q8N567 271 aaKnown RBP23.54■■□□□ 1.36
PTPN4-208ENST00000460289 OR7D4Q8NG98 312 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 SNX19Q92543 992 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 BIRC7Q96CA5 298 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 TRIM11Q96F44 468 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 ZDHHC5Q9C0B5 715 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 ATP13A1Q9HD20 1204 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 IFNKQ9P0W0 207 aa23.54■■□□□ 1.36
PTPN4-208ENST00000460289 FAM72CH0Y354 149 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 DDX3XO00571 662 aaKnown RBP eCLIP23.53■■□□□ 1.365e-7■□□□□ 9
PTPN4-208ENST00000460289 FSBPO95073 299 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 L1CAMP32004 1257 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 ZBED6P86452 979 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 FAM72AQ5TYM5 149 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 FAM72DQ6L9T8 149 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 Q6ZVU0 165 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 TMC6Q7Z403 805 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 NLRP14Q86W24 1093 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 FAM72BQ86X60 149 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 C1orf216Q8TAB5 229 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 CPLX3Q8WVH0 158 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 OSGEPQ9NPF4 335 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 FSCN3Q9NQT6 498 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 TMEM248Q9NWD8 314 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 SERGEFQ9UGK8 458 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 PPM1HQ9ULR3 514 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 CAPN11Q9UMQ6 739 aa23.53■■□□□ 1.36
PTPN4-208ENST00000460289 LUC7L2Q9Y383 392 aaKnown RBP23.53■■□□□ 1.36
PTPN4-208ENST00000460289 CXorf51AA0A1B0GTR3 108 aa23.52■■□□□ 1.36
PTPN4-208ENST00000460289 FAM47DPA6NHR8 397 aa23.52■■□□□ 1.36
PTPN4-208ENST00000460289 C1QTNF3-AMACRE9PGA6 284 aa23.52■■□□□ 1.36
PTPN4-208ENST00000460289 MYBL1P10243 752 aa23.52■■□□□ 1.36
PTPN4-208ENST00000460289 GALCP54803 685 aa23.52■■□□□ 1.36
PTPN4-208ENST00000460289 KIAA0895LQ68EN5 471 aa23.52■■□□□ 1.36
PTPN4-208ENST00000460289 VPS36Q86VN1 386 aa23.52■■□□□ 1.36
PTPN4-208ENST00000460289 AADATQ8N5Z0 425 aa23.52■■□□□ 1.36
PTPN4-208ENST00000460289 OR2T34Q8NGX1 318 aa23.52■■□□□ 1.36
PTPN4-208ENST00000460289 MAGEB5Q9BZ81 275 aa23.52■■□□□ 1.36
PTPN4-208ENST00000460289 CNOT8Q9UFF9 292 aaKnown RBP23.52■■□□□ 1.36
PTPN4-208ENST00000460289 TPX2Q9ULW0 747 aaKnown RBP23.52■■□□□ 1.36
PTPN4-208ENST00000460289 FZD10Q9ULW2 581 aa23.52■■□□□ 1.36
PTPN4-208ENST00000460289 SCINQ9Y6U3 715 aa23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms