RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 EIF4BP23588 611 aaKnown RBP7.29□□□□□ -1.24
VPS53-204ENST00000437048 POLR2LP62875 67 aaKnown RBP7.29□□□□□ -1.24
VPS53-204ENST00000437048 CDO1Q16878 200 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 HSD17B12Q53GQ0 312 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 IFNEQ86WN2 208 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 ANKMY2Q8IV38 441 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 SPIRE2Q8WWL2 714 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 GMCL1Q96IK5 515 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 REEP2Q9BRK0 252 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 FAM172BPA6NC97 362 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 INPP4BO15327 924 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 SLC6A4P31645 630 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 MAGEA2P43356 314 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 ANKS6Q68DC2 871 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 TYW3Q6IPR3 259 aaKnown RBP7.29□□□□□ -1.24
VPS53-204ENST00000437048 HAVCR2Q8TDQ0 301 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 NLNQ9BYT8 704 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 SMPD3Q9NY59 655 aaPredicted RBP7.29□□□□□ -1.24
VPS53-204ENST00000437048 VANGL2Q9ULK5 521 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 TDRKHQ9Y2W6 561 aaKnown RBP7.29□□□□□ -1.24
VPS53-204ENST00000437048 ZSCAN5CA6NGD5 496 aaPredicted RBP7.29□□□□□ -1.24
VPS53-204ENST00000437048 H3BUI4 141 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 RGS10O43665 173 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 GMFGO60234 142 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 IER5Q5VY09 327 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 SLC25A24Q6NUK1 477 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 NIPAL1Q6NVV3 410 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 UBE2R2Q712K3 238 aaPredicted RBP7.29□□□□□ -1.24
VPS53-204ENST00000437048 UTS2BQ765I0 119 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 LRRC20Q8TCA0 184 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 TMEM47Q9BQJ4 181 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 FUCA2Q9BTY2 467 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 RPS6KB2Q9UBS0 482 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 V9GYQ6 96 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 LGR5O75473 907 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 ASMTP46597 345 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 CNPY1Q3B7I2 92 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 DGKKQ5KSL6 1271 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 UNC5BQ8IZJ1 945 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 SERPINB11Q96P15 392 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 MCEEQ96PE7 176 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 AIFM2Q9BRQ8 373 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 POLR3FQ9H1D9 316 aaPredicted RBP7.29□□□□□ -1.24
VPS53-204ENST00000437048 KPNA6O60684 536 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 KLRC1P26715 233 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 ZNF276Q8N554 614 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 ZNF671Q8TAW3 534 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 HDAC2Q92769 488 aaKnown RBP7.29□□□□□ -1.24
VPS53-204ENST00000437048 TBC1D10AQ9BXI6 508 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 MED28Q9H204 178 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 SP140LQ9H930 580 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.29□□□□□ -1.24
VPS53-204ENST00000437048 VDRP11473 427 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 CHMP1BQ7LBR1 199 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 OR2B2Q9GZK3 357 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 DDX18Q9NVP1 670 aaKnown RBP7.29□□□□□ -1.24
VPS53-204ENST00000437048 TFCP2L1Q9NZI6 479 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 SLC12A4Q9UP95 1085 aa7.29□□□□□ -1.24
VPS53-204ENST00000437048 MRPS14O60783 128 aaKnown RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 ALDH3A2P51648 485 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 ABRQ12979 859 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 NAT14Q8WUY8 206 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 PHB2Q99623 299 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 SLC22A4Q9H015 551 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 ENTPD7Q9NQZ7 604 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 ZNF7P17097 686 aaPredicted RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 GSTM5P46439 218 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 AP2S1P53680 142 aaPredicted RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 MPP1Q00013 466 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 AMPD2Q01433 879 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 KLHL24Q6TFL4 600 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 MACC1Q6ZN28 852 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 APOBEC3FQ8IUX4 373 aaKnown RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 FSTL5Q8N475 847 aaPredicted RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 TOR1AIP2Q8NFQ8 470 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 TMEM121Q9BTD3 319 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 AP4E1Q9UPM8 1137 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 ZNF879B4DU55 563 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 DDX3XO00571 662 aaKnown RBP eCLIP7.28□□□□□ -1.24
VPS53-204ENST00000437048 NPPAP01160 153 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 HSMCR30P0CW71 290 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 TPRP12270 2363 aaKnown RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 TBX2Q13207 712 aaPredicted RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 ZNF211Q13398 564 aaPredicted RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 FBXO36Q8NEA4 188 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 SPASTQ9UBP0 616 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 ZNF70Q9UC06 446 aaPredicted RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 SFMBT1Q9UHJ3 866 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 HOXA2O43364 376 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 SUPT7LO94864 414 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 GNG2P59768 71 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 TEAD4Q15561 434 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 KIZQ2M2Z5 673 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 AGKQ53H12 422 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 ANKRD26P1Q6NSI1 321 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 QSOX2Q6ZRP7 698 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 SPATA19Q7Z5L4 167 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 CCDC28AQ8IWP9 274 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 DPY30Q9C005 99 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 CYLDQ9NQC7 956 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms