RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 WDR77Q9BQA1 342 aaPredicted RBP3.68□□□□□ -1.82
CLK1-204ENST00000432425 HIPK3Q9H422 1215 aa3.68□□□□□ -1.82
CLK1-204ENST00000432425 RAP2CQ9Y3L5 183 aa3.68□□□□□ -1.82
CLK1-204ENST00000432425 LRP12Q9Y561 859 aa3.68□□□□□ -1.82
CLK1-204ENST00000432425 OR6C75A6NL08 312 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 GTPBP1O00178 669 aaKnown RBP3.67□□□□□ -1.82
CLK1-204ENST00000432425 SYN3O14994 580 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 HMGB1P09429 215 aaKnown RBP3.67□□□□□ -1.82
CLK1-204ENST00000432425 HOXA11P31270 313 aaPredicted RBP3.67□□□□□ -1.82
CLK1-204ENST00000432425 PNLIPRP1P54315 467 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 GXYLT1Q4G148 440 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 DCAF12L2Q5VW00 463 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 LIN54Q6MZP7 749 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 MTFR2Q6P444 385 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 RRAGAQ7L523 313 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 RNF144BQ7Z419 303 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 ENGASEQ8NFI3 743 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 IFT27Q9BW83 186 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 CATSPERBQ9H7T0 1116 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 Q9N2J8 555 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 TMEM248Q9NWD8 314 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 SELENONQ9NZV5 590 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 WNT16Q9UBV4 365 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 FZD10Q9ULW2 581 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 DAAM1Q9Y4D1 1078 aa3.67□□□□□ -1.82
CLK1-204ENST00000432425 NPIPB13A6NJU9 1138 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 NPIPB5A8MRT5 1133 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 NPIPB4C9JG80 1138 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 SPRY3O43610 288 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 SLC28A2O43868 658 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 TMCC1O94876 653 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 HOXC6P09630 235 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 CHRNB2P17787 502 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 TYK2P29597 1187 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 HOXD3P31249 432 aaPredicted RBP3.66□□□□□ -1.82
CLK1-204ENST00000432425 TMPRSS3P57727 454 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 SELENOVP59797 346 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 EGR4Q05215 589 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 UBE4AQ14139 1066 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 CCDC38Q502W7 563 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 DNTTIP2Q5QJE6 756 aaKnown RBP3.66□□□□□ -1.82
CLK1-204ENST00000432425 KRTAP5-4Q6L8H1 288 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 NOL8Q76FK4 1167 aaKnown RBP3.66□□□□□ -1.82
CLK1-204ENST00000432425 TRILQ7L0X0 811 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 FSIP1Q8NA03 581 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 KDM1BQ8NB78 822 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 VPS37AQ8NEZ2 397 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 BICD2Q8TD16 824 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 POF1BQ8WVV4 589 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 NEUROG1Q92886 237 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 MED30Q96HR3 178 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 URB1-AS1Q96HZ7 61 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 ZNF333Q96JL9 665 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 MEIS3Q99687 375 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 POLDIP3Q9BY77 421 aaKnown RBP3.66□□□□□ -1.82
CLK1-204ENST00000432425 CLPBQ9H078 707 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 NOTCH4Q99466 2003 aa3.66□□□□□ -1.82
CLK1-204ENST00000432425 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.65□□□□□ -1.82
CLK1-204ENST00000432425 HMX3A6NHT5 357 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 BECN2A8MW95 431 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 STMND1H3BQB6 276 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 RGS14O43566 566 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 CYP4B1P13584 511 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 ZP1P60852 638 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 GPS2Q13227 327 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 PDCLQ13371 301 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 SLC4A8Q2Y0W8 1093 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 TANGO2Q6ICL3 276 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 SPATA2LQ8IUW3 424 aaPredicted RBP3.65□□□□□ -1.82
CLK1-204ENST00000432425 SCN4BQ8IWT1 228 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 HORMAD2Q8N7B1 307 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 PTGR2Q8N8N7 351 aaPredicted RBP3.65□□□□□ -1.82
CLK1-204ENST00000432425 STT3BQ8TCJ2 826 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 ELP5Q8TE02 316 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 OTUD7AQ8TE49 926 aaPredicted RBP3.65□□□□□ -1.82
CLK1-204ENST00000432425 FRG2BQ96QU4 278 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 CADM1Q9BY67 442 aaKnown RBP3.65□□□□□ -1.82
CLK1-204ENST00000432425 SEZ6LQ9BYH1 1024 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.65□□□□□ -1.82
CLK1-204ENST00000432425 ABHD16BQ9H3Z7 469 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 ZDHHC7Q9NXF8 308 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 KCND3Q9UK17 655 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 RCE1Q9Y256 329 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 PTGDR2Q9Y5Y4 395 aa3.65□□□□□ -1.82
CLK1-204ENST00000432425 CCDC194A0A1B0GVG4 234 aa3.65□□□□□ -1.83
CLK1-204ENST00000432425 A0A1B0GVT2 93 aa3.65□□□□□ -1.83
CLK1-204ENST00000432425 C4orf47A7E2U8 309 aa3.65□□□□□ -1.83
CLK1-204ENST00000432425 INAFM1C9JVW0 142 aa3.65□□□□□ -1.83
CLK1-204ENST00000432425 H0Y3Z8 333 aa3.65□□□□□ -1.83
CLK1-204ENST00000432425 MS4A18H0YCH9 400 aa3.65□□□□□ -1.83
CLK1-204ENST00000432425 ACAA1P09110 424 aaPredicted RBP3.65□□□□□ -1.83
CLK1-204ENST00000432425 FCGR2AP12318 317 aa3.65□□□□□ -1.83
CLK1-204ENST00000432425 LYL1P12980 280 aa3.65□□□□□ -1.83
CLK1-204ENST00000432425 PRKCHP24723 683 aa3.65□□□□□ -1.83
CLK1-204ENST00000432425 TNFRSF8P28908 595 aa3.65□□□□□ -1.83
CLK1-204ENST00000432425 AVPR1AP37288 418 aa3.65□□□□□ -1.83
CLK1-204ENST00000432425 RPS6KA3P51812 740 aa3.65□□□□□ -1.83
CLK1-204ENST00000432425 LTBQ06643 244 aa3.65□□□□□ -1.83
CLK1-204ENST00000432425 CHAF1AQ13111 956 aaPredicted RBP3.65□□□□□ -1.83
CLK1-204ENST00000432425 DCTN1Q14203 1278 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms