RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 IRGMA1A4Y4 181 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 RECQL5O94762 991 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-204ENST00000423058 MAPTP10636 758 aaKnown RBP6.96□□□□□ -1.3
SCN1A-204ENST00000423058 PRLRP16471 622 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 CCR3P51677 355 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 NME5P56597 212 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 LSM12Q3MHD2 195 aaKnown RBP6.96□□□□□ -1.3
SCN1A-204ENST00000423058 AGKQ53H12 422 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 PDPK2PQ6A1A2 396 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 SLC27A1Q6PCB7 646 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 RASSF6Q6ZTQ3 369 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 CCDC80Q76M96 950 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 KCNMB4Q86W47 210 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 SYT12Q8IV01 421 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 GMCL1P1Q8NEA9 526 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 DNAJB3Q8WWF6 145 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 PIK3R5Q8WYR1 880 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 AP3S1Q92572 193 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 RORBQ92753 470 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 IL17RAQ96F46 866 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 OSMRQ99650 979 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 HGH1Q9BTY7 390 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 ISCUQ9H1K1 167 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 FKBP14Q9NWM8 211 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 PCDHB11Q9Y5F2 797 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 ABCA9Q8IUA7 1624 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 CNTNAP4Q9C0A0 1308 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 ZSCAN5CA6NGD5 496 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-204ENST00000423058 RGL2O15211 777 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 IFNGP01579 166 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 IL1BP01584 269 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 S100A3P33764 101 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 RPL21P46778 160 aaKnown RBP6.96□□□□□ -1.3
SCN1A-204ENST00000423058 ZNF846Q147U1 533 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 ACAP1Q15027 740 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 ACAP2Q15057 778 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 PUS10Q3MIT2 529 aaKnown RBP6.96□□□□□ -1.3
SCN1A-204ENST00000423058 ATXN7L2Q5T6C5 722 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-204ENST00000423058 LLGL2Q6P1M3 1020 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 BNIPLQ7Z465 357 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 PHYKPLQ8IUZ5 450 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 TPCN2Q8NHX9 752 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 ZNF607Q96SK3 696 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 VAT1Q99536 393 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.96□□□□□ -1.3
SCN1A-204ENST00000423058 SCAF8Q9UPN6 1271 aaKnown RBP6.96□□□□□ -1.3
SCN1A-204ENST00000423058 ANGPT4Q9Y264 503 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 LOC100653049A0A140TA62 436 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 IL1R1P14778 569 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 GNSP15586 552 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 MCL1Q07820 350 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 GALNT3Q14435 633 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 TFAP2DQ7Z6R9 452 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 FAM83AQ86UY5 434 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 ZNF563Q8TA94 476 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 UBP1Q9NZI7 540 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 CCDC88AQ3V6T2 1871 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 GSAPA4D1B5 854 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 MAGEA13PA6NCF6 341 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 TRIM64A6NGJ6 449 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 GIMD1P0DJR0 217 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 ATP6V1B1P15313 513 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 TTPAP49638 278 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 CLCN3P51790 818 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 OAZ1P54368 228 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 MGAT5Q09328 741 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 ITIH4Q14624 930 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-204ENST00000423058 TMC8Q8IU68 726 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 METTL6Q8TCB7 284 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 FAM136AQ96C01 138 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 TAAR1Q96RJ0 339 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 VPS4AQ9UN37 437 aa6.96□□□□□ -1.3
SCN1A-204ENST00000423058 A0A0X1KG70 313 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ZNF208O43345 1280 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 TPST1O60507 370 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 CYP2C18P33260 490 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 OMPP47874 163 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 PSEN2P49810 448 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 CRY1Q16526 586 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ADSSL1Q8N142 457 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 CISHQ9NSE2 258 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 PXDNLA1KZ92 1463 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 A0A1B0GTH6 734 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 BCL10O95999 233 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 CCNYL3P0C7X3 344 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 CPA3P15088 417 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 EPORP19235 508 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 SLC7A2P52569 658 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 GMFBP60983 142 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 GRB14Q14449 540 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 KLHDC7AQ5VTJ3 777 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 CXXC5Q7LFL8 322 aaKnown RBP6.95□□□□□ -1.3
SCN1A-204ENST00000423058 SLC13A5Q86YT5 568 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ZDHHC13Q8IUH4 622 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 FAM126BQ8IXS8 530 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 KYQ8NBH2 561 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ATP8B4Q8TF62 1192 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 ELMO1Q92556 727 aa6.95□□□□□ -1.3
SCN1A-204ENST00000423058 JMJD4Q9H9V9 463 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms