RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 GATMP50440 423 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 TWF1Q12792 350 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 FRG1Q14331 258 aaKnown RBP8.56□□□□□ -1.04
USP54-203ENST00000418501 SLC14A2Q15849 920 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 SDHAF4Q5VUM1 108 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 ADGRD1Q6QNK2 874 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 TMA16Q96EY4 203 aaKnown RBP8.56□□□□□ -1.04
USP54-203ENST00000418501 CELF6Q96J87 481 aaKnown RBP8.56□□□□□ -1.04
USP54-203ENST00000418501 MAGEB18Q96M61 343 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 TUBB6Q9BUF5 446 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 ADGRE3Q9BY15 652 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 TBC1D14Q9P2M4 693 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 GGA2Q9UJY4 613 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 GRID1Q9ULK0 1009 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 TRIP12Q14669 1992 aaPredicted RBP8.56□□□□□ -1.04
USP54-203ENST00000418501 FAM237BA0A1B0GVD1 139 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 ILVBLA1L0T0 632 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 H0YHG0 523 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 KCNK1O00180 336 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 MSI1O43347 362 aaKnown RBP8.56□□□□□ -1.04
USP54-203ENST00000418501 SHOX2O60902 331 aaPredicted RBP8.56□□□□□ -1.04
USP54-203ENST00000418501 GABBR2O75899 941 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 HNRNPA1P09651 372 aaKnown RBP eCLIP8.56□□□□□ -1.04
USP54-203ENST00000418501 HLA-DPA1P20036 260 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 LBX1P52954 281 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 FAXCQ5TGI0 409 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 KLC3Q6P597 504 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 CYP4V2Q6ZWL3 525 aaPredicted RBP8.56□□□□□ -1.04
USP54-203ENST00000418501 IPMKQ8NFU5 416 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 ATXN2LQ8WWM7 1075 aaKnown RBP8.56□□□□□ -1.04
USP54-203ENST00000418501 ZNF669Q96BR6 464 aaPredicted RBP8.56□□□□□ -1.04
USP54-203ENST00000418501 SLC39A13Q96H72 371 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 PRPF4O43172 522 aaKnown RBP eCLIP8.56□□□□□ -1.04
USP54-203ENST00000418501 H2AFYO75367 372 aaKnown RBP8.56□□□□□ -1.04
USP54-203ENST00000418501 ABLIM3O94929 683 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 CRTAMO95727 393 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 MPOP05164 745 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 FYNP06241 537 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 TFE3P19532 575 aaPredicted RBP8.56□□□□□ -1.04
USP54-203ENST00000418501 NFKB1P19838 968 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 ADRA1DP25100 572 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 RECQLP46063 649 aaPredicted RBP8.56□□□□□ -1.04
USP54-203ENST00000418501 SEPT6Q14141 434 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 MPPE1Q53F39 396 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 RNF219Q5W0B1 726 aaPredicted RBP8.56□□□□□ -1.04
USP54-203ENST00000418501 DNAJB7Q7Z6W7 309 aaPredicted RBP8.56□□□□□ -1.04
USP54-203ENST00000418501 MGARPQ8TDB4 240 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 C2orf49Q9BVC5 232 aaPredicted RBP8.56□□□□□ -1.04
USP54-203ENST00000418501 CWH43Q9H720 699 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 RXFP1Q9HBX9 757 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 HACD3Q9P035 362 aa8.56□□□□□ -1.04
USP54-203ENST00000418501 GLRA3O75311 464 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 USP1O94782 785 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 SHBGP04278 402 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 SERPINB8P50452 374 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 PRKAA2P54646 552 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 EPHB1P54762 984 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 MS4A13Q5J8X5 152 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 NUDT18Q6ZVK8 323 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 USP33Q8TEY7 942 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 SLC44A1Q8WWI5 657 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 ATXN3LQ9H3M9 355 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 MRM3Q9HC36 420 aaKnown RBP8.55□□□□□ -1.04
USP54-203ENST00000418501 ZMYND8Q9ULU4 1186 aaPredicted RBP8.55□□□□□ -1.04
USP54-203ENST00000418501 ANKRD6Q9Y2G4 727 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 A0A1W2PQ67 120 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 WDR27A2RRH5 827 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 DRGXA6NNA5 263 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 ATP9BO43861 1147 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 MAP3K6O95382 1288 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 FGF1P05230 155 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 PTPN2P17706 415 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 PRAMEP78395 509 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 SLC12A1Q13621 1099 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 ADGRF1Q5T601 910 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 RNF187Q5TA31 235 aaPredicted RBP8.55□□□□□ -1.04
USP54-203ENST00000418501 OTOP2Q7RTS6 562 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 KREMEN2Q8NCW0 462 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 NUDCD1Q96RS6 583 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 FICDQ9BVA6 458 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 ATP13A1Q9HD20 1204 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 C20orf96Q9NUD7 363 aaPredicted RBP8.55□□□□□ -1.04
USP54-203ENST00000418501 TEX264Q9Y6I9 313 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 SCN1AP35498 2009 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 ZNF840PA6NDX5 716 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 PABPN1LA6NDY0 278 aaKnown RBP8.55□□□□□ -1.04
USP54-203ENST00000418501 TBC1D4O60343 1298 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 GJB5O95377 273 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 ALADP13716 330 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 MGAT1P26572 445 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 SMAD3P84022 425 aaKnown RBP8.55□□□□□ -1.04
USP54-203ENST00000418501 LBRQ14739 615 aaKnown RBP8.55□□□□□ -1.04
USP54-203ENST00000418501 LRRC26Q2I0M4 334 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 PREPLQ4J6C6 727 aaPredicted RBP8.55□□□□□ -1.04
USP54-203ENST00000418501 HP1BP3Q5SSJ5 553 aaPredicted RBP8.55□□□□□ -1.04
USP54-203ENST00000418501 PSMG2Q969U7 264 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 YY1AP1Q9H869 796 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 NMUR1Q9HB89 426 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 NT5MQ9NPB1 228 aa8.55□□□□□ -1.04
USP54-203ENST00000418501 MRPL42Q9Y6G3 142 aaKnown RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 189.5 ms