RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 SDC3O75056 442 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 CTSLP07711 333 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 SRCP12931 536 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 PRKCSHP14314 528 aaPredicted RBP11.88□□□□□ -0.51
USP4-204ENST00000416417 PRLRP16471 622 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 RRM1P23921 792 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 NOS2P35228 1153 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 TAS2R38P59533 333 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 SULT2A1Q06520 285 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 KCNMA1Q12791 1236 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 CAMK2BQ13554 666 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 DRAP1Q14919 205 aaPredicted RBP11.88□□□□□ -0.51
USP4-204ENST00000416417 DPCR1Q3MIW9 517 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 RAB6CQ53S08 254 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 MIIPQ5JXC2 388 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 TTC39BQ5VTQ0 682 aaPredicted RBP11.88□□□□□ -0.51
USP4-204ENST00000416417 AGBL4Q5VU57 503 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 TRNP1Q6NT89 227 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 SLC26A9Q7LBE3 791 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 PHLDB2Q86SQ0 1253 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 SH2D3CQ8N5H7 860 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 CHST14Q8NCH0 376 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 ARRDC3Q96B67 414 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 CRELD1Q96HD1 420 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 NOX5Q96PH1 765 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 NPY6RQ99463 290 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 RAB6CQ9H0N0 254 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 PDCL3Q9H2J4 239 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 TNKS2Q9H2K2 1166 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 WDCPQ9H6R7 721 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 FZD3Q9NPG1 666 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.88□□□□□ -0.51
USP4-204ENST00000416417 PPM1HQ9ULR3 514 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 TP53BP1Q12888 1972 aaPredicted RBP11.88□□□□□ -0.51
USP4-204ENST00000416417 KNL1Q8NG31 2342 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 LAMA5O15230 3695 aa11.88□□□□□ -0.51
USP4-204ENST00000416417 A0A0D9SEW6 157 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 GTPBP10A4D1E9 387 aaKnown RBP11.87□□□□□ -0.51
USP4-204ENST00000416417 LATO43561 262 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 PLRG1O43660 514 aaKnown RBP11.87□□□□□ -0.51
USP4-204ENST00000416417 RHOCP08134 193 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 EPHA8P29322 1005 aaPredicted RBP11.87□□□□□ -0.51
USP4-204ENST00000416417 DEUP1Q05D60 604 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 SMAD1Q15797 465 aaKnown RBP11.87□□□□□ -0.51
USP4-204ENST00000416417 MAN2A1Q16706 1144 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 VWA3BQ502W6 1294 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 FAM102AQ5T9C2 384 aaPredicted RBP11.87□□□□□ -0.51
USP4-204ENST00000416417 NAPEPLDQ6IQ20 393 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 PRPF39Q86UA1 669 aaKnown RBP11.87□□□□□ -0.51
USP4-204ENST00000416417 FAM71AQ8IYT1 594 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 ZNF683Q8IZ20 524 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 MLKLQ8NB16 471 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 ATP11CQ8NB49 1132 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 OR7D4Q8NG98 312 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 SKA1Q96BD8 255 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 FAM81BQ96LP2 452 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 NDST4Q9H3R1 872 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 ARHGEF38Q9NXL2 777 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 VPS51Q9UID3 782 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 ACTL7AQ9Y615 435 aa11.87□□□□□ -0.51
USP4-204ENST00000416417 KPNA3O00505 521 aaPredicted RBP11.86□□□□□ -0.51
USP4-204ENST00000416417 MCF2LO15068 1137 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 SLC31A1O15431 190 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 DFNA5O60443 496 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 RNGTTO60942 597 aaKnown RBP11.86□□□□□ -0.51
USP4-204ENST00000416417 SRGAP2O75044 1071 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 CLDN11O75508 207 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 FLT3P36888 993 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 CXCR3P49682 368 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 CDH4P55283 916 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 INAVAQ3KP66 663 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 ARTNQ5T4W7 220 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 DSG4Q86SJ6 1040 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 NOP9Q86U38 636 aaKnown RBP11.86□□□□□ -0.51
USP4-204ENST00000416417 XYLT1Q86Y38 959 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 GALNT15Q8N3T1 639 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 ZNF397Q8NF99 534 aaPredicted RBP11.86□□□□□ -0.51
USP4-204ENST00000416417 CPA5Q8WXQ8 436 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 LRIG1Q96JA1 1093 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 CFAP57Q96MR6 1250 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 TUBGCP2Q9BSJ2 902 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 CLSTN2Q9H4D0 955 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 SAMSN1Q9NSI8 373 aaKnown RBP11.86□□□□□ -0.51
USP4-204ENST00000416417 TBC1D30Q9Y2I9 924 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 CELSR3Q9NYQ7 3312 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 ADAMTS20P59510 1910 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 FAM208BQ5VWN6 2430 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 A0A1W2PQU0 124 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 C1QTNF3-AMACRE9PGA6 284 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 GJB6O95452 261 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 MMEP08473 750 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 CYP11B1P15538 503 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 CHRNA3P32297 505 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 ARRB1P49407 418 aaPredicted RBP11.86□□□□□ -0.51
USP4-204ENST00000416417 ACADVLP49748 655 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 KLK7P49862 253 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 OXCT1P55809 520 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 C5orf22Q49AR2 442 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 SLC45A4Q5BKX6 768 aa11.86□□□□□ -0.51
USP4-204ENST00000416417 PIP5KL1Q5T9C9 394 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms