RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 HNRNPA1P09651 372 aaKnown RBP eCLIP14.36□□□□□ -0.11
GPNMB-203ENST00000409458 SLCO1A2P46721 670 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 NUMBP49757 651 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 OLIG2Q13516 323 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 SERINC3Q13530 473 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 SPARCL1Q14515 664 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 TEAD2Q15562 447 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 LONRF1Q17RB8 773 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 SLC5A9Q2M3M2 681 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 CCDC38Q502W7 563 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 DNAJC21Q5F1R6 531 aaKnown RBP14.36□□□□□ -0.11
GPNMB-203ENST00000409458 ZNF697Q5TEC3 545 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 PPP2R2DQ66LE6 453 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 CHST9Q7L1S5 443 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 OTOP3Q7RTS5 596 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 ZNF354CQ86Y25 554 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 SH2D3CQ8N5H7 860 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 ATP11CQ8NB49 1132 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 TTC16Q8NEE8 873 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 ARNTL2Q8WYA1 636 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 ARHGEF2Q92974 986 aaKnown RBP14.36□□□□□ -0.11
GPNMB-203ENST00000409458 ATP6V1G3Q96LB4 118 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 GDF15Q99988 308 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 VPS37BQ9H9H4 285 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 SP110Q9HB58 689 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 CFAP97Q9P2B7 532 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 TTLL3Q9Y4R7 772 aa14.36□□□□□ -0.11
GPNMB-203ENST00000409458 RANBP2P49792 3224 aaKnown RBP14.35□□□□□ -0.11
GPNMB-203ENST00000409458 A0A0D9SEW6 157 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 A0A1B0GVM2 712 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 GOLGA6CA6NDK9 693 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 TCAF2A6NFQ2 919 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 EPOPA6NHQ4 379 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 GFRA2O00451 464 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 CACNG3O60359 315 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 CLDN11O75508 207 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 FGF19O95750 216 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 AP2A1O95782 977 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 GOLGA6DP0CG33 693 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 PTPN2P17706 415 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 PFKLP17858 780 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 SSTR1P30872 391 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 GYS2P54840 703 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 YBEYP58557 167 aaPredicted RBP14.35□□□□□ -0.11
GPNMB-203ENST00000409458 NTHL1P78549 312 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 CDK16Q00536 496 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 ANO4Q32M45 955 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 GPR158Q5T848 1215 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 KCTD11Q693B1 232 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 LRRC8BQ6P9F7 803 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 FAM217AQ8IXS0 508 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 MPP5Q8N3R9 675 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 FATE1Q969F0 183 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 OXNAD1Q96HP4 312 aaPredicted RBP14.35□□□□□ -0.11
GPNMB-203ENST00000409458 RETREG1Q9H6L5 497 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 XAB2Q9HCS7 855 aaKnown RBP14.35□□□□□ -0.11
GPNMB-203ENST00000409458 RBM22Q9NW64 420 aaKnown RBP eCLIP14.35□□□□□ -0.11
GPNMB-203ENST00000409458 PIH1D1Q9NWS0 290 aaKnown RBP14.35□□□□□ -0.11
GPNMB-203ENST00000409458 GOLGA6AQ9NYA3 693 aa14.35□□□□□ -0.11
GPNMB-203ENST00000409458 LSM7Q9UK45 103 aaKnown RBP14.35□□□□□ -0.11
GPNMB-203ENST00000409458 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.34□□□□□ -0.11
GPNMB-203ENST00000409458 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.34□□□□□ -0.11
GPNMB-203ENST00000409458 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.34□□□□□ -0.11
GPNMB-203ENST00000409458 TLDC2A0PJX2 215 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 LEFTY2O00292 366 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 RASGRF2O14827 1237 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 XYLBO75191 536 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 SUN1O94901 812 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 RHOCP08134 193 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 MLNP12872 115 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 SARNPP82979 210 aaKnown RBP14.34□□□□□ -0.11
GPNMB-203ENST00000409458 GNA12Q03113 381 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 PRSS36Q5K4E3 855 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 C6orf118Q5T5N4 469 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 AGBL2Q5U5Z8 902 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 TTC39BQ5VTQ0 682 aaPredicted RBP14.34□□□□□ -0.11
GPNMB-203ENST00000409458 KLHDC8BQ8IXV7 354 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.34□□□□□ -0.11
GPNMB-203ENST00000409458 OR7D4Q8NG98 312 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 ZNF707Q96C28 371 aaPredicted RBP14.34□□□□□ -0.11
GPNMB-203ENST00000409458 PABPC5Q96DU9 382 aaKnown RBP14.34□□□□□ -0.11
GPNMB-203ENST00000409458 PDFQ9HBH1 243 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 GLOD4Q9HC38 313 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 ZDHHC7Q9NXF8 308 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 UBP1Q9NZI7 540 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 BCCIPQ9P287 314 aaKnown RBP eCLIP14.34□□□□□ -0.11
GPNMB-203ENST00000409458 ARHGAP26Q9UNA1 814 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 SH3BP1Q9Y3L3 701 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 CDH23Q9H251 3354 aa14.34□□□□□ -0.11
GPNMB-203ENST00000409458 LAMA3Q16787 3333 aa14.33□□□□□ -0.11
GPNMB-203ENST00000409458 HMGB1P1B2RPK0 211 aaPredicted RBP14.33□□□□□ -0.11
GPNMB-203ENST00000409458 TBL1XO60907 577 aa14.33□□□□□ -0.11
GPNMB-203ENST00000409458 USP12O75317 370 aa14.33□□□□□ -0.11
GPNMB-203ENST00000409458 CPP00450 1065 aa14.33□□□□□ -0.11
GPNMB-203ENST00000409458 DDX6P26196 483 aaKnown RBP eCLIP14.33□□□□□ -0.11
GPNMB-203ENST00000409458 HOXD9P28356 352 aaPredicted RBP14.33□□□□□ -0.11
GPNMB-203ENST00000409458 IL10RBQ08334 325 aa14.33□□□□□ -0.11
GPNMB-203ENST00000409458 SLC10A7Q0GE19 358 aa14.33□□□□□ -0.11
GPNMB-203ENST00000409458 PRPSAP1Q14558 356 aa14.33□□□□□ -0.11
GPNMB-203ENST00000409458 STAT4Q14765 748 aa14.33□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms