RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ARMC7Q9H6L4 198 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 PLEKHA5Q9HAU0 1116 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 PSAT1Q9Y617 370 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 SLC15A5A6NIM6 579 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 TRIM13O60858 407 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 COX4I1P13073 169 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 VCLP18206 1134 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 ADORA2AP29274 412 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 CCR10P46092 362 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 SLC6A3Q01959 620 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 UBE3AQ05086 875 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 FUT11Q495W5 492 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 CERCAMQ5T4B2 595 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 ZNF781Q8N8C0 355 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 APPL2Q8NEU8 664 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 PABPC5Q96DU9 382 aaKnown RBP12.15□□□□□ -0.46
HMGB1-206ENST00000405805 CEP19Q96LK0 163 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 TBATAQ96M53 351 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 AGAP2Q99490 1192 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 ATP8B3O60423 1300 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 UTRNP46939 3433 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 UBA6A0AVT1 1052 aaPredicted RBP12.15□□□□□ -0.46
HMGB1-206ENST00000405805 SYCE1LA8MT33 242 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 ABLIM1O14639 778 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 RGS20O76081 388 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 SUPT7LO94864 414 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 EDN1P05305 212 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 THRAP10827 490 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 GNAZP19086 355 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 MAGP20916 626 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 HDAC4P56524 1084 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 CTBP1Q13363 440 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 NR1D2Q14995 579 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 TTC33Q6PID6 262 aaPredicted RBP12.15□□□□□ -0.46
HMGB1-206ENST00000405805 ADCK1Q86TW2 530 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 NRAPQ86VF7 1730 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 HASPINQ8TF76 798 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 DDI1Q8WTU0 396 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 C18orf25Q96B23 403 aaPredicted RBP12.15□□□□□ -0.46
HMGB1-206ENST00000405805 TBCBQ99426 244 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 NPAS2Q99743 824 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 BEGAINQ9BUH8 593 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 PLGRKTQ9HBL7 147 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 S100A14Q9HCY8 104 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 SETD4Q9NVD3 440 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 ERAP1Q9NZ08 941 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 PCDHGA4Q9Y5G9 962 aa12.15□□□□□ -0.46
HMGB1-206ENST00000405805 TMEM247A6NEH6 219 aa12.15□□□□□ -0.47
HMGB1-206ENST00000405805 C3orf70A6NLC5 250 aaPredicted RBP12.15□□□□□ -0.47
HMGB1-206ENST00000405805 DYNC1LI2O43237 492 aaPredicted RBP12.15□□□□□ -0.47
HMGB1-206ENST00000405805 BUD23O43709 281 aaKnown RBP12.15□□□□□ -0.47
HMGB1-206ENST00000405805 HBP1O60381 514 aa12.15□□□□□ -0.47
HMGB1-206ENST00000405805 CTSHP09668 335 aa12.15□□□□□ -0.47
HMGB1-206ENST00000405805 TFPTP0C1Z6 253 aa12.15□□□□□ -0.47
HMGB1-206ENST00000405805 SLC25A11Q02978 314 aaKnown RBP12.15□□□□□ -0.47
HMGB1-206ENST00000405805 ARL13BQ3SXY8 428 aa12.15□□□□□ -0.47
HMGB1-206ENST00000405805 PPM1LQ5SGD2 360 aa12.15□□□□□ -0.47
HMGB1-206ENST00000405805 C6orf52Q5T4I8 152 aa12.15□□□□□ -0.47
HMGB1-206ENST00000405805 ZNF618Q5T7W0 954 aa12.15□□□□□ -0.47
HMGB1-206ENST00000405805 CDH24Q86UP0 819 aa12.15□□□□□ -0.47
HMGB1-206ENST00000405805 NMRAL1Q9HBL8 299 aa12.15□□□□□ -0.47
HMGB1-206ENST00000405805 GPRC5DQ9NZD1 345 aa12.15□□□□□ -0.47
HMGB1-206ENST00000405805 SPEF1Q9Y4P9 236 aa12.15□□□□□ -0.47
HMGB1-206ENST00000405805 SMIM31A0A1B0GVY4 71 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 CHEK2O96017 543 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 PSMC3P17980 439 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 RPL5P46777 297 aaKnown RBP12.14□□□□□ -0.47
HMGB1-206ENST00000405805 SLC7A5P1Q8MH63 180 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 SHKBP1Q8TBC3 707 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 DQX1Q8TE96 717 aaKnown RBP12.14□□□□□ -0.47
HMGB1-206ENST00000405805 SDCBP2Q9H190 292 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 SNX15Q9NRS6 342 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 MATN2O00339 956 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 MAGEB2O15479 319 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 CNOT3O75175 753 aaKnown RBP12.14□□□□□ -0.47
HMGB1-206ENST00000405805 CHRNGP07510 517 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 MYCLP1P12525 358 aaPredicted RBP12.14□□□□□ -0.47
HMGB1-206ENST00000405805 GRK2P25098 689 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 ASPAP45381 313 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 ZNF460Q14592 562 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 STILQ15468 1287 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 MAP1SQ66K74 1059 aaPredicted RBP12.14□□□□□ -0.47
HMGB1-206ENST00000405805 TMC7Q7Z402 723 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 PDCD6IPQ8WUM4 868 aaKnown RBP12.14□□□□□ -0.47
HMGB1-206ENST00000405805 KCTD4Q8WVF5 259 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 SKA1Q96BD8 255 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 P2RY11Q96G91 374 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 COQ6Q9Y2Z9 468 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 M0R3G1 203 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 TK2O00142 265 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 ARL2P36404 184 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 YWHAHQ04917 246 aaPredicted RBP12.14□□□□□ -0.47
HMGB1-206ENST00000405805 WASHC5Q12768 1159 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 CCDC85BQ15834 202 aaPredicted RBP12.14□□□□□ -0.47
HMGB1-206ENST00000405805 RGS21Q2M5E4 152 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 ATG14Q6ZNE5 492 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 CCDC185Q8N715 623 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 ST13P5Q8NFI4 369 aaPredicted RBP12.14□□□□□ -0.47
HMGB1-206ENST00000405805 ATP6V1E2Q96A05 226 aa12.14□□□□□ -0.47
HMGB1-206ENST00000405805 FAM96AQ9H5X1 160 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms