RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 CORO1AP31146 461 aaKnown RBP9.48□□□□□ -0.89
VPS53-203ENST00000401468 HARS2P49590 506 aaKnown RBP9.48□□□□□ -0.89
VPS53-203ENST00000401468 MLLT6P55198 1093 aaPredicted RBP9.48□□□□□ -0.89
VPS53-203ENST00000401468 DHX9Q08211 1270 aaKnown RBP9.48□□□□□ -0.89
VPS53-203ENST00000401468 NME3Q13232 169 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 PUM1Q14671 1186 aaKnown RBP eCLIP9.48□□□□□ -0.89
VPS53-203ENST00000401468 IFI16Q16666 785 aaKnown RBP9.48□□□□□ -0.89
VPS53-203ENST00000401468 CDO1Q16878 200 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 ZC3H12AQ5D1E8 599 aaKnown RBP9.48□□□□□ -0.89
VPS53-203ENST00000401468 MS4A13Q5J8X5 152 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 ADGRF1Q5T601 910 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 PIK3R6Q5UE93 754 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 LAIR1Q6GTX8 287 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 NADSYN1Q6IA69 706 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 SND1Q7KZF4 910 aaKnown RBP eCLIP9.48□□□□□ -0.89
VPS53-203ENST00000401468 WDR5BQ86VZ2 330 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 FAM131BQ86XD5 332 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 VSIG1Q86XK7 387 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 TMEM25Q86YD3 366 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 ADGRG2Q8IZP9 1017 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 CCAR2Q8N163 923 aaKnown RBP9.48□□□□□ -0.89
VPS53-203ENST00000401468 CCDC185Q8N715 623 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 TXNDC5Q8NBS9 432 aaKnown RBP9.48□□□□□ -0.89
VPS53-203ENST00000401468 MSANTD3Q96H12 275 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 SLC6A17Q9H1V8 727 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 RETREG1Q9H6L5 497 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 CD93Q9NPY3 652 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 FSCN3Q9NQT6 498 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 MARK1Q9P0L2 795 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 SH3BP1Q9Y3L3 701 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 CAPN6Q9Y6Q1 641 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 ATXN2Q99700 1313 aaKnown RBP9.48□□□□□ -0.89
VPS53-203ENST00000401468 UNC79Q9P2D8 2635 aa9.48□□□□□ -0.89
VPS53-203ENST00000401468 PCNX2A6NKB5 2137 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 KNL1Q8NG31 2342 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 GOLGA6L9A6NEM1 432 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 TTLL8A6PVC2 850 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 ZNF487B1APH4 448 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 PATE3B3GLJ2 98 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 NEDD8-MDP1E9PL57 170 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 ACSL4O60488 711 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 PAGE1O75459 146 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 PENKP01210 267 aaPredicted RBP9.47□□□□□ -0.89
VPS53-203ENST00000401468 VSIG8P0DPA2 414 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 DESP17661 470 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 DRD1P21728 446 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 SLC6A4P31645 630 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 HTR7P34969 479 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 CHKAP35790 457 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 SLC11A2P49281 568 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 NUMBP49757 651 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 ARSEP51690 589 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 ZNF135P52742 658 aaPredicted RBP9.47□□□□□ -0.89
VPS53-203ENST00000401468 TAS2R40P59535 323 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 MESDQ14696 234 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 DPYSL2Q16555 572 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 MPP7Q5T2T1 576 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 ERMARDQ5T6L9 678 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 DAB2IPQ5VWQ8 1189 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 PRR23CQ6ZRP0 262 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 NT5DC3Q86UY8 548 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 CPNE8Q86YQ8 564 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 ATP6V0D2Q8N8Y2 350 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 MDGA1Q8NFP4 955 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 USP33Q8TEY7 942 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 HMGB4Q8WW32 186 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 GAB3Q8WWW8 586 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 ACOX2Q99424 681 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 SNRNP25Q9BV90 132 aaKnown RBP9.47□□□□□ -0.89
VPS53-203ENST00000401468 FAM126AQ9BYI3 521 aaPredicted RBP9.47□□□□□ -0.89
VPS53-203ENST00000401468 TKTL2Q9H0I9 626 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 ARHGEF4Q9NR80 690 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 PPARGC1AQ9UBK2 798 aaKnown RBP9.47□□□□□ -0.89
VPS53-203ENST00000401468 ZNF212Q9UDV6 495 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 XPO7Q9UIA9 1087 aaKnown RBP9.47□□□□□ -0.89
VPS53-203ENST00000401468 ZKSCAN5Q9Y2L8 839 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 GPSM3Q9Y4H4 160 aa9.47□□□□□ -0.89
VPS53-203ENST00000401468 GCN1Q92616 2671 aaKnown RBP9.47□□□□□ -0.89
VPS53-203ENST00000401468 ASH1LQ9NR48 2969 aaKnown RBP9.46□□□□□ -0.89
VPS53-203ENST00000401468 MACROD2A1Z1Q3 448 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 C3orf70A6NLC5 250 aaPredicted RBP9.46□□□□□ -0.9
VPS53-203ENST00000401468 DRGXA6NNA5 263 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 USP27XA6NNY8 438 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 HOXC11O43248 304 aaPredicted RBP9.46□□□□□ -0.9
VPS53-203ENST00000401468 PSTPIP1O43586 416 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 BUB1O43683 1085 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 PRPSAP2O60256 369 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 PALMO75781 387 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 KAT7O95251 611 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 MOCS3O95396 460 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 COMTP21964 271 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 CTNNA2P26232 953 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 L1CAMP32004 1257 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 CTNNA1P35221 906 aaKnown RBP9.46□□□□□ -0.9
VPS53-203ENST00000401468 NOP2P46087 812 aaKnown RBP9.46□□□□□ -0.9
VPS53-203ENST00000401468 HCAR3P49019 387 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 PEX5P50542 639 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 CREB5Q02930 508 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 NR1H3Q13133 447 aa9.46□□□□□ -0.9
VPS53-203ENST00000401468 TAZQ16635 292 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms