RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 NUGGCQ68CJ6 796 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 ALKBH5Q6P6C2 394 aaKnown RBP10.66□□□□□ -0.7
NEDD8-202ENST00000396828 IL27RAQ6UWB1 636 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 TAC4Q86UU9 113 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 MMAAQ8IVH4 418 aaKnown RBP10.66□□□□□ -0.7
NEDD8-202ENST00000396828 UNC45BQ8IWX7 931 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 APCDD1Q8J025 514 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 SLC20A1Q8WUM9 679 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 ZNF606Q8WXB4 792 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 AZIN2Q96A70 460 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 HSFY1Q96LI6 401 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 SLC6A18Q96N87 628 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 FAM129BQ96TA1 746 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 DESI2Q9BSY9 194 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 SYT11Q9BT88 431 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 PCED1AQ9H1Q7 454 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 NEUROG2Q9H2A3 272 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 PABPC3Q9H361 631 aaKnown RBP10.66□□□□□ -0.7
NEDD8-202ENST00000396828 ST7Q9NRC1 585 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 FBXL12Q9NXK8 326 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 KIAA1522Q9P206 1035 aaPredicted RBP10.66□□□□□ -0.7
NEDD8-202ENST00000396828 GPSM3Q9Y4H4 160 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 PCDHGB2Q9Y5G2 931 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 PCDHA13Q9Y5I0 950 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 ADGRG1Q9Y653 693 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 GOLGA4Q13439 2230 aaKnown RBP10.66□□□□□ -0.7
NEDD8-202ENST00000396828 NYNRINQ9P2P1 1898 aaKnown RBP10.66□□□□□ -0.7
NEDD8-202ENST00000396828 DOCK9Q9BZ29 2069 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 A0A1W2PP55 124 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 C10orf142B7Z368 130 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 CBX4O00257 560 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 DDX3XO00571 662 aaKnown RBP eCLIP10.65□□□□□ -0.71e-12■■□□□ 12.1
NEDD8-202ENST00000396828 FLRT2O43155 660 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 IRAK2O43187 625 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 LSM8O95777 96 aaKnown RBP10.65□□□□□ -0.7
NEDD8-202ENST00000396828 GZMAP12544 262 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 VAV1P15498 845 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 CHRNB2P17787 502 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 MAGEA1P43355 309 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 GRIA4P48058 902 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 STK19P49842 368 aaPredicted RBP10.65□□□□□ -0.7
NEDD8-202ENST00000396828 GALCP54803 685 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 CLDN6P56747 220 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 FMO1Q01740 532 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 ZBTB16Q05516 673 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 EIF4EBP2Q13542 120 aaPredicted RBP10.65□□□□□ -0.7
NEDD8-202ENST00000396828 E2F5Q15329 346 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 SHBQ15464 509 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 ZC3H12AQ5D1E8 599 aaKnown RBP10.65□□□□□ -0.7
NEDD8-202ENST00000396828 RAP1GAP2Q684P5 730 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 ZNF776Q68DI1 518 aaPredicted RBP10.65□□□□□ -0.7
NEDD8-202ENST00000396828 KIAA0895LQ68EN5 471 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 NCEH1Q6PIU2 408 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 TMPRSS7Q7RTY8 843 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 CIR1Q86X95 450 aaPredicted RBP10.65□□□□□ -0.7
NEDD8-202ENST00000396828 CCAR2Q8N163 923 aaKnown RBP10.65□□□□□ -0.7
NEDD8-202ENST00000396828 AADATQ8N5Z0 425 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 HJURPQ8NCD3 748 aaPredicted RBP10.65□□□□□ -0.7
NEDD8-202ENST00000396828 ACRBPQ8NEB7 543 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 SLC30A5Q8TAD4 765 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 PTPRN2Q92932 1015 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 FAM149B1Q96BN6 582 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 RPL10LQ96L21 214 aaKnown RBP10.65□□□□□ -0.7
NEDD8-202ENST00000396828 SLC4A5Q9BY07 1137 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 TSGA10Q9BZW7 698 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 SGK2Q9HBY8 427 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 OSGEPQ9NPF4 335 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 KCND1Q9NSA2 647 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.65□□□□□ -0.7
NEDD8-202ENST00000396828 SUN2Q9UH99 717 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 PCDHGC3Q9UN70 934 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 ERVW-1Q9UQF0 538 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 APOBEC2Q9Y235 224 aaKnown RBP10.65□□□□□ -0.7
NEDD8-202ENST00000396828 TLR6Q9Y2C9 796 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 RAXQ9Y2V3 346 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 ACACAQ13085 2346 aa10.65□□□□□ -0.7
NEDD8-202ENST00000396828 TMCO5BA8MYB1 307 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 ESPNB1AK53 854 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 E5RJQ4 531 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 PLK4O00444 970 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 KRT86O43790 486 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 RTN2O75298 545 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 RNASEH2AO75792 299 aaKnown RBP10.64□□□□□ -0.71
NEDD8-202ENST00000396828 FBXO21O94952 628 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 LUC7L3O95232 432 aaKnown RBP10.64□□□□□ -0.71
NEDD8-202ENST00000396828 IGLV3-25P01717 112 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 MZF1P28698 734 aaPredicted RBP10.64□□□□□ -0.71
NEDD8-202ENST00000396828 NSFP46459 744 aaKnown RBP10.64□□□□□ -0.71
NEDD8-202ENST00000396828 IRAK1P51617 712 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 VAV2P52735 878 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 KIF5AQ12840 1032 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 CAMK2BQ13554 666 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 CST6Q15828 149 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 CLEC16AQ2KHT3 1053 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 COL28A1Q2UY09 1125 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 CCDC157Q569K6 752 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 GATAD2AQ86YP4 633 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 LGI2Q8N0V4 545 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 STK40Q8N2I9 435 aa10.64□□□□□ -0.71
NEDD8-202ENST00000396828 WDTC1Q8N5D0 677 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms