RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ALOX15BO15296 676 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 SNAP91O60641 907 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 SRGAP2O75044 1071 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 MT-CO1P00395 513 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 SRCP12931 536 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 SDC4P31431 198 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 DRD3P35462 400 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 PTPN9P43378 593 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 NSFP46459 744 aaKnown RBP22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 CCR5P51681 352 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 ADPRHP54922 357 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 RACK1P63244 317 aaKnown RBP22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 C15orf59Q2T9L4 293 aaPredicted RBP22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 RAB6CQ53S08 254 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 FAM46CQ5VWP2 391 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 Q6ZVU0 165 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 PHF13Q86YI8 300 aaPredicted RBP22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 DCAF4L2Q8NA75 395 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 OR14C36Q8NHC7 312 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 JOSD2Q8TAC2 188 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 NAT10Q9H0A0 1025 aaKnown RBP22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 RAB6CQ9H0N0 254 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 EBF2Q9HAK2 575 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 ADAM22Q9P0K1 906 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 PPARGC1AQ9UBK2 798 aaKnown RBP22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 SARDHQ9UL12 918 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 PPM1HQ9ULR3 514 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 SNX11Q9Y5W9 270 aa22.25■■□□□ 1.15
CCDC28B-201ENST00000373602 ILVBLA1L0T0 632 aa22.24■■□□□ 1.15
CCDC28B-201ENST00000373602 GJB6O95452 261 aa22.24■■□□□ 1.15
CCDC28B-201ENST00000373602 TOP3BO95985 862 aaKnown RBP22.24■■□□□ 1.15
CCDC28B-201ENST00000373602 OR1E1P30953 314 aa22.24■■□□□ 1.15
CCDC28B-201ENST00000373602 METAP1P53582 386 aa22.24■■□□□ 1.15
CCDC28B-201ENST00000373602 CDO1Q16878 200 aa22.24■■□□□ 1.15
CCDC28B-201ENST00000373602 ANO6Q4KMQ2 910 aa22.24■■□□□ 1.15
CCDC28B-201ENST00000373602 LAYNQ6UX15 382 aa22.24■■□□□ 1.15
CCDC28B-201ENST00000373602 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP22.24■■□□□ 1.15
CCDC28B-201ENST00000373602 ZNF783Q6ZMS7 281 aa22.24■■□□□ 1.15
CCDC28B-201ENST00000373602 DBX2Q6ZNG2 339 aa22.24■■□□□ 1.15
CCDC28B-201ENST00000373602 CENPIQ92674 756 aaPredicted RBP22.24■■□□□ 1.15
CCDC28B-201ENST00000373602 BPIFA3Q9BQP9 254 aa22.24■■□□□ 1.15
CCDC28B-201ENST00000373602 ZYG11BQ9C0D3 744 aa22.24■■□□□ 1.15
CCDC28B-201ENST00000373602 TPX2Q9ULW0 747 aaKnown RBP22.24■■□□□ 1.15
CCDC28B-201ENST00000373602 PCDHGB2Q9Y5G2 931 aa22.24■■□□□ 1.15
CCDC28B-201ENST00000373602 DOCK4Q8N1I0 1966 aa22.23■■□□□ 1.15
CCDC28B-201ENST00000373602 SLC7A4O43246 635 aa22.23■■□□□ 1.15
CCDC28B-201ENST00000373602 CBFA2T3O75081 653 aa22.23■■□□□ 1.15
CCDC28B-201ENST00000373602 CALB1P05937 261 aa22.23■■□□□ 1.15
CCDC28B-201ENST00000373602 KRT3P12035 628 aa22.23■■□□□ 1.15
CCDC28B-201ENST00000373602 ADRA1BP35368 520 aa22.23■■□□□ 1.15
CCDC28B-201ENST00000373602 NRG1Q02297 640 aaPredicted RBP22.23■■□□□ 1.15
CCDC28B-201ENST00000373602 TRIP6Q15654 476 aaKnown RBP22.23■■□□□ 1.15
CCDC28B-201ENST00000373602 ARL13BQ3SXY8 428 aa22.23■■□□□ 1.15
CCDC28B-201ENST00000373602 STRADAQ7RTN6 431 aa22.23■■□□□ 1.15
CCDC28B-201ENST00000373602 ATP11CQ8NB49 1132 aa22.23■■□□□ 1.15
CCDC28B-201ENST00000373602 OR7D4Q8NG98 312 aa22.23■■□□□ 1.15
CCDC28B-201ENST00000373602 PIP4K2CQ8TBX8 421 aa22.23■■□□□ 1.15
CCDC28B-201ENST00000373602 SLC6A18Q96N87 628 aa22.23■■□□□ 1.15
CCDC28B-201ENST00000373602 AGPAT1Q99943 283 aa22.23■■□□□ 1.15
CCDC28B-201ENST00000373602 PCDHB9Q9Y5E1 797 aa22.23■■□□□ 1.15
CCDC28B-201ENST00000373602 KNL1Q8NG31 2342 aa22.23■■□□□ 1.15
CCDC28B-201ENST00000373602 C1QTNF3-AMACRE9PGA6 284 aa22.22■■□□□ 1.15
CCDC28B-201ENST00000373602 K7ERQ8 282 aa22.22■■□□□ 1.15
CCDC28B-201ENST00000373602 PLK4O00444 970 aa22.22■■□□□ 1.15
CCDC28B-201ENST00000373602 SPINK2P20155 84 aa22.22■■□□□ 1.15
CCDC28B-201ENST00000373602 CTSKP43235 329 aa22.22■■□□□ 1.15
CCDC28B-201ENST00000373602 CLCN6P51797 869 aa22.22■■□□□ 1.15
CCDC28B-201ENST00000373602 KCNT1Q5JUK3 1230 aa22.22■■□□□ 1.15
CCDC28B-201ENST00000373602 MON1BQ7L1V2 547 aa22.22■■□□□ 1.15
CCDC28B-201ENST00000373602 ADAT2Q7Z6V5 191 aaKnown RBP22.22■■□□□ 1.15
CCDC28B-201ENST00000373602 C3orf20Q8ND61 904 aa22.22■■□□□ 1.15
CCDC28B-201ENST00000373602 SCNM1Q9BWG6 230 aa22.22■■□□□ 1.15
CCDC28B-201ENST00000373602 OSBPL2Q9H1P3 480 aa22.22■■□□□ 1.15
CCDC28B-201ENST00000373602 KDM4CQ9H3R0 1056 aa22.22■■□□□ 1.15
CCDC28B-201ENST00000373602 OR12D3Q9UGF7 316 aa22.22■■□□□ 1.15
CCDC28B-201ENST00000373602 PCOLCE2Q9UKZ9 415 aa22.22■■□□□ 1.15
CCDC28B-201ENST00000373602 PLXNA2O75051 1894 aa22.22■■□□□ 1.15
CCDC28B-201ENST00000373602 CHD8Q9HCK8 2581 aa22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 TBC1D3DA0A087WVF3 549 aa22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 TBC1D3IA0A087WXS9 549 aa22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 TBC1D3EA0A087X179 549 aa22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 TBC1D3KA0A087X1G2 549 aa22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 TBC1D3FA6NER0 549 aaPredicted RBP22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 TBC1D3LB9A6J9 549 aa22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 VILLO15195 856 aa22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 TEX33O43247 280 aa22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 SMAD6O43541 496 aaKnown RBP22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 PLRG1O43660 514 aaKnown RBP22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 BNIP3LO60238 219 aa22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 RTN2O75298 545 aa22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 TRIM16O95361 564 aa22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 TBC1D3HP0C7X1 549 aa22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 FERP16591 822 aa22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 RRM1P23921 792 aa22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 RFC1P35251 1148 aaPredicted RBP22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 HDAC4P56524 1084 aa22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 C1QBPQ07021 282 aaKnown RBP22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 CNTN1Q12860 1018 aa22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 ZNF423Q2M1K9 1284 aa22.21■■□□□ 1.15
CCDC28B-201ENST00000373602 MANEALQ5VSG8 457 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms