RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 MTDHQ86UE4 582 aaKnown RBP7.47□□□□□ -1.21
VPS13A-202ENST00000357409 UBE2J2Q8N2K1 259 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 CAPNS2Q96L46 248 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 YIPF4Q9BSR8 244 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 LRRC40Q9H9A6 602 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 SYBUQ9NX95 663 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 MARCH2Q9P0N8 246 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 PCDHGC4Q9Y5F7 938 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 ARHGAP31Q2M1Z3 1444 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 KHNYNO15037 678 aaKnown RBP7.47□□□□□ -1.21
VPS13A-202ENST00000357409 SLC16A5O15375 505 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 FAM155BO75949 473 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 ITPKAP23677 461 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 NPY2RP49146 381 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 NAB1Q13506 487 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 NKD1Q969G9 470 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 RNFT2Q96EX2 444 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 CDC42EP4Q9H3Q1 356 aaKnown RBP7.47□□□□□ -1.21
VPS13A-202ENST00000357409 FCF1Q9Y324 198 aaKnown RBP7.47□□□□□ -1.21
VPS13A-202ENST00000357409 OR10H1Q9Y4A9 318 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 TIMM22Q9Y584 194 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 A0A087X0B3 334 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 TNFRSF10BO14763 440 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 IDH3BO43837 385 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 SLC2A3P11169 496 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 RPL4P36578 427 aaKnown RBP7.47□□□□□ -1.21
VPS13A-202ENST00000357409 CYP24A1Q07973 514 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 BST2Q10589 180 aaKnown RBP7.47□□□□□ -1.21
VPS13A-202ENST00000357409 CCT8L2Q96SF2 557 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 DLGAP2Q9P1A6 1054 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 PCDHGA3Q9Y5H0 932 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 A0A075B6Q4 140 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 A0A1W2PRU2 124 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 RRM2P31350 389 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 DGCR6Q14129 220 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 NEDD8Q15843 81 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 PRAMEF14Q5SWL7 426 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 CACHD1Q5VU97 1274 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 FAM183BPQ6ZVS7 135 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 KCNMB4Q86W47 210 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 GPC2Q8N158 579 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 CERS5Q8N5B7 392 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 HNRNPLLQ8WVV9 542 aaKnown RBP7.47□□□□□ -1.21
VPS13A-202ENST00000357409 ZNF354BQ96LW1 612 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 SGIP1Q9BQI5 828 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 TMEM120AQ9BXJ8 343 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 EHD4Q9H223 541 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 ARHGAP20Q9P2F6 1191 aa7.47□□□□□ -1.21
VPS13A-202ENST00000357409 M0R3G1 203 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 MTX2O75431 263 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 SLC25A12O75746 678 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 IGSF6O95976 241 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 CLTBP09497 229 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 SLC1A6P48664 564 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 NEK2P51955 445 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 PPP3CAQ08209 521 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 FAAP100Q0VG06 881 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 STX4Q12846 297 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 CCSAPQ6IQ19 270 aaPredicted RBP7.46□□□□□ -1.21
VPS13A-202ENST00000357409 DBF4BQ8NFT6 615 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 ZNF563Q8TA94 476 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 OLFML3Q9NRN5 406 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 KLC4Q9NSK0 619 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 SPATS2LQ9NUQ6 558 aaKnown RBP7.46□□□□□ -1.21
VPS13A-202ENST00000357409 CFAP97Q9P2B7 532 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 RPAP1Q9BWH6 1393 aaPredicted RBP7.46□□□□□ -1.21
VPS13A-202ENST00000357409 C1orf232A0A0U1RR37 186 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 KDM4FA0A1W2PPD8 638 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 ARHGEF9O43307 516 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 PCDH1Q08174 1060 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 SUZ12Q15022 739 aaKnown RBP7.46□□□□□ -1.21
VPS13A-202ENST00000357409 WDR93Q6P2C0 686 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 ZNF598Q86UK7 904 aaKnown RBP7.46□□□□□ -1.21
VPS13A-202ENST00000357409 LINC00032P0C843 101 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 ZNF8P17098 575 aaPredicted RBP7.46□□□□□ -1.21
VPS13A-202ENST00000357409 CCND3P30281 292 aaPredicted RBP7.46□□□□□ -1.21
VPS13A-202ENST00000357409 TBCELQ5QJ74 424 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 CCNYL2Q5T2Q4 361 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 EMBQ6PCB8 327 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 METTL27Q8N6F8 245 aaPredicted RBP7.46□□□□□ -1.21
VPS13A-202ENST00000357409 ASAH2Q9NR71 780 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 ANAPC2Q9UJX6 822 aa7.46□□□□□ -1.21
VPS13A-202ENST00000357409 TRAV19A0A0A6YYK7 116 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 SCGNO76038 276 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 MTA2O94776 668 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 ATG7O95352 703 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 PRKCHP24723 683 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 MAPRE2Q15555 327 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 APOBEC3HQ6NTF7 200 aaKnown RBP7.46□□□□□ -1.22
VPS13A-202ENST00000357409 UNC5AQ6ZN44 842 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 USP50Q70EL3 339 aaPredicted RBP7.46□□□□□ -1.22
VPS13A-202ENST00000357409 KCTD4Q8WVF5 259 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 SLC9A6Q92581 669 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 STOML1Q9UBI4 398 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 CDH9Q9ULB4 789 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 CDY1Q9Y6F8 540 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 SMAD9O15198 467 aaKnown RBP7.46□□□□□ -1.22
VPS13A-202ENST00000357409 CYP3A5P20815 502 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 PCYT1AP49585 367 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 IRX1P78414 480 aaPredicted RBP7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms