RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 MARCKSL1P49006 195 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 MAPK10P53779 464 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 EPHB1P54762 984 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 SULT2A1Q06520 285 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 NFE2Q16621 373 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-203ENST00000354674 USP41Q3LFD5 358 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 CTXN3Q4LDR2 81 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 RSPO2Q6UXX9 243 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-203ENST00000354674 UBL4BQ8N7F7 174 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 SLC26A7Q8TE54 656 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 CLEC4CQ8WTT0 213 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 SREK1Q8WXA9 508 aaKnown RBP10.33□□□□□ -0.76
SYNE1-203ENST00000354674 CLP1Q92989 425 aaKnown RBP10.33□□□□□ -0.76
SYNE1-203ENST00000354674 BTBD10Q9BSF8 475 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 HERC2P3Q9BVR0 1158 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 SIAEQ9HAT2 523 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 MTRF1LQ9UGC7 380 aaKnown RBP10.33□□□□□ -0.76
SYNE1-203ENST00000354674 CIDEBQ9UHD4 219 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 USP3Q9Y6I4 520 aa10.33□□□□□ -0.76
SYNE1-203ENST00000354674 PIK3R2O00459 728 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 SPOPO43791 374 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 FBXO21O94952 628 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 SOD2P04179 222 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 LCP1P13796 627 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 GPR17Q13304 367 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 PDK3Q15120 406 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 SLC39A12Q504Y0 691 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 DUPD1Q68J44 220 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 PM20D1Q6GTS8 502 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 RIPOR1Q6ZS17 1223 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 BHLHA9Q7RTU4 235 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 GPRIN1Q7Z2K8 1008 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 GPR65Q8IYL9 337 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.32□□□□□ -0.76
SYNE1-203ENST00000354674 TMIGD2Q96BF3 282 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 B3GALT6Q96L58 329 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 PAIP1Q9H074 479 aaKnown RBP10.32□□□□□ -0.76
SYNE1-203ENST00000354674 CCDC134Q9H6E4 229 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 CNGB3Q9NQW8 809 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 MTRRQ9UBK8 725 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 TNFRSF10BO14763 440 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 VNN2O95498 520 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 GAS8O95995 478 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 OR4Q2P0C623 313 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 KRT15P19012 456 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 TAS2R40P59535 323 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 MRPS5P82675 430 aaKnown RBP10.32□□□□□ -0.76
SYNE1-203ENST00000354674 IL9RQ01113 521 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 ADIGQ0VDE8 80 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 TAF5Q15542 800 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 TRIP10Q15642 601 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 FAAH2Q6GMR7 532 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 SLC8B1Q6J4K2 584 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 BNIPLQ7Z465 357 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 DDX53Q86TM3 631 aaKnown RBP10.32□□□□□ -0.76
SYNE1-203ENST00000354674 TMPRSS6Q8IU80 811 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 SPATA2LQ8IUW3 424 aaPredicted RBP10.32□□□□□ -0.76
SYNE1-203ENST00000354674 EMC1Q8N766 993 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 C2orf15Q8WU43 125 aaKnown RBP10.32□□□□□ -0.76
SYNE1-203ENST00000354674 CENPIQ92674 756 aaPredicted RBP10.32□□□□□ -0.76
SYNE1-203ENST00000354674 INPP5DQ92835 1189 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 SLC9A7Q96T83 725 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 YME1L1Q96TA2 773 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 TXLNGYQ9BZA5 131 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 STMN4Q9H169 189 aaPredicted RBP10.32□□□□□ -0.76
SYNE1-203ENST00000354674 NAALADL1Q9UQQ1 740 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 CAPN8A6NHC0 703 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 CCDC22O60826 627 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 DCTN3O75935 186 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 GPD1P21695 349 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 CA4P22748 312 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 SERPINB6P35237 376 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 SKIV2L2P42285 1042 aaKnown RBP10.32□□□□□ -0.76
SYNE1-203ENST00000354674 PTPN9P43378 593 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 ARPC4P59998 168 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 PDK1Q15118 436 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 CTC1Q2NKJ3 1217 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 CCDC14Q49A88 953 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 DCAF6Q58WW2 860 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 EFHC1Q5JVL4 640 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 FAM117BQ6P1L5 589 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 FBXL19Q6PCT2 694 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 ARHGEF18Q6ZSZ5 1173 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 VASH1Q7L8A9 365 aaPredicted RBP10.32□□□□□ -0.76
SYNE1-203ENST00000354674 POLNQ7Z5Q5 900 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 RHOT1Q8IXI2 618 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 NT5C3BQ969T7 300 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 C8orf48Q96LL4 319 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 MAGEB18Q96M61 343 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 SLC2A13Q96QE2 648 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 CNPY3Q9BT09 278 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 SLC7A5P2Q9GIP4 190 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 SPG21Q9NZD8 308 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 GRHL1Q9NZI5 618 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 STK39Q9UEW8 545 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 INSL6Q9Y581 213 aa10.32□□□□□ -0.76
SYNE1-203ENST00000354674 LRCH4O75427 683 aa10.31□□□□□ -0.76
SYNE1-203ENST00000354674 VCLP18206 1134 aa10.31□□□□□ -0.76
SYNE1-203ENST00000354674 PSMA2P25787 234 aa10.31□□□□□ -0.76
SYNE1-203ENST00000354674 NDUFV1P49821 464 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms