RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 OXSR1O95747 527 aaPredicted RBP6.92□□□□□ -1.3
VPS39-202ENST00000348544 ARSAP15289 507 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 YBX3P16989 372 aaKnown RBP eCLIP6.92□□□□□ -1.3
VPS39-202ENST00000348544 TMED10P49755 219 aaKnown RBP6.92□□□□□ -1.3
VPS39-202ENST00000348544 EIF2B2P49770 351 aaKnown RBP6.92□□□□□ -1.3
VPS39-202ENST00000348544 GTF2A2P52657 109 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 MLLT10P55197 1068 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 SESN2P58004 480 aaPredicted RBP6.92□□□□□ -1.3
VPS39-202ENST00000348544 PSME3P61289 254 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 PRKCEQ02156 737 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 SP4Q02446 784 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 PRKCQQ04759 706 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 EGFLAMQ63HQ2 1017 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 PPP4R4Q6NUP7 873 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 OLFML1Q6UWY5 402 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 CYP2R1Q6VVX0 501 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 CHRDL2Q6WN34 429 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 GK5Q6ZS86 529 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 FAM196AQ6ZSG2 479 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 BRSK2Q8IWQ3 736 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 HACE1Q8IYU2 909 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 ACVR1CQ8NER5 493 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 HMGCLL1Q8TB92 370 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 LPGAT1Q92604 370 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 ISL2Q96A47 359 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 APBA2Q99767 749 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 ADPGKQ9BRR6 497 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 CNPY3Q9BT09 278 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 MAGEB5Q9BZ81 275 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 ILKAPQ9H0C8 392 aaPredicted RBP6.92□□□□□ -1.3
VPS39-202ENST00000348544 CAB39LQ9H9S4 337 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.92□□□□□ -1.3
VPS39-202ENST00000348544 TRPC7Q9HCX4 862 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 SUCOQ9UBS9 1254 aaKnown RBP6.92□□□□□ -1.3
VPS39-202ENST00000348544 ZDHHC2Q9UIJ5 367 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 ITGB1BP2Q9UKP3 347 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 RAP2CQ9Y3L5 183 aa6.92□□□□□ -1.3
VPS39-202ENST00000348544 SCN9AQ15858 1988 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 SCN4AP35499 1836 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 PRORSD1PA6NEY8 169 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 LRRIQ4A6NIV6 560 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 TRIM24O15164 1050 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 PRPSAP2O60256 369 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 PLA2G6O60733 806 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 PIGNO95427 931 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 LDHAP00338 332 aaKnown RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 SBK3P0C264 359 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 MCF2P10911 925 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 HDCP19113 662 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 TFEBP19484 476 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 GPD1P21695 349 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 ETFBP38117 255 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 CAP2P40123 477 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 GRIA3P42263 894 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 PSMD8P48556 350 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 RPL14P50914 215 aaKnown RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 PGGT1BP53609 377 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 CDH8P55286 799 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 RPS6P62753 249 aaKnown RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 GHRHRQ02643 423 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 NME3Q13232 169 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 NR1D2Q14995 579 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 EMC2Q15006 297 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 PDK2Q15119 407 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 MOGQ16653 247 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 KIZQ2M2Z5 673 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 MTERF2Q49AM1 385 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 ARL13AQ5H913 290 aaPredicted RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 C6orf10Q5SRN2 563 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 SEL1L3Q68CR1 1132 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 NXNQ6DKJ4 435 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 SLFN12LQ6IEE8 588 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 ZBTB49Q6ZSB9 765 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 CCDC80Q76M96 950 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 FAM160B2Q86V87 743 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 EPHX4Q8IUS5 362 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 WDR49Q8IV35 697 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 CPXCR1Q8N123 301 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 CNTD1Q8N815 330 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 CDKL2Q92772 493 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 ACDQ96AP0 544 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 SNX27Q96L92 541 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 FCRL3Q96P31 734 aaPredicted RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 MPHOSPH6Q99547 160 aaKnown RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 PDCD2LQ9BRP1 358 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 DHX35Q9H5Z1 703 aaKnown RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 OXSMQ9NWU1 459 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 SYBUQ9NX95 663 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 MFHAS1Q9Y4C4 1052 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 SAC3D1A6NKF1 404 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 TMEM233B4DJY2 109 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 H0YCG3 227 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 K7ERI5 159 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 TK2O00142 265 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 NRP1O14786 923 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 DYNC1LI2O43237 492 aaPredicted RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 MICAL2O94851 1124 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 SEC24DO94855 1032 aaPredicted RBP6.91□□□□□ -1.3
VPS39-202ENST00000348544 CLIC3O95833 236 aa6.91□□□□□ -1.3
VPS39-202ENST00000348544 PDGFRAP16234 1089 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms