RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 UNC5BQ8IZJ1 945 aa13.35□□□□□ -0.27
COL18A1-201ENST00000342220 SLC25A41Q8N5S1 370 aa13.35□□□□□ -0.27
COL18A1-201ENST00000342220 SLC43A3Q8NBI5 491 aa13.35□□□□□ -0.27
COL18A1-201ENST00000342220 IPMKQ8NFU5 416 aa13.35□□□□□ -0.27
COL18A1-201ENST00000342220 SMG9Q9H0W8 520 aaKnown RBP13.35□□□□□ -0.27
COL18A1-201ENST00000342220 ABCC13Q9NSE7 274 aa13.35□□□□□ -0.27
COL18A1-201ENST00000342220 SLC17A6Q9P2U8 582 aa13.35□□□□□ -0.27
COL18A1-201ENST00000342220 GJB5O95377 273 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 CKMP06732 381 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 MYL4P12829 197 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 GPX6P59796 221 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 MRPS35P82673 323 aaKnown RBP13.34□□□□□ -0.27
COL18A1-201ENST00000342220 ANKS3Q6ZW76 656 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 OTOP3Q7RTS5 596 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 SDCCAG8Q86SQ7 713 aaPredicted RBP13.34□□□□□ -0.27
COL18A1-201ENST00000342220 PPIL6Q8IXY8 311 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 TMEM199Q8N511 208 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 NPWQ8N729 165 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 LRRC37BQ96QE4 947 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 DRG1Q9Y295 367 aaKnown RBP13.34□□□□□ -0.27
COL18A1-201ENST00000342220 USH1CQ9Y6N9 552 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 XIRP2A4UGR9 3374 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 EDF1O60869 148 aaKnown RBP13.34□□□□□ -0.27
COL18A1-201ENST00000342220 PAX3P23760 479 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 PDK4Q16654 411 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 ZNF449Q6P9G9 518 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 CDKL3Q8IVW4 592 aaPredicted RBP13.34□□□□□ -0.27
COL18A1-201ENST00000342220 PNPLA1Q8N8W4 532 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 SPATA22Q8NHS9 363 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 DTNBP1Q96EV8 351 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 IGSF21Q96ID5 467 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 TXLNGQ9NUQ3 528 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 SMG5Q9UPR3 1016 aaKnown RBP13.34□□□□□ -0.27
COL18A1-201ENST00000342220 HHLA1C9JL84 531 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 TLL1O43897 1013 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 CNTN5O94779 1100 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 ITGAVP06756 1048 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 KRT4P19013 534 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 TYMPP19971 482 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 WEE1P30291 646 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 SKIV2L2P42285 1042 aaKnown RBP13.34□□□□□ -0.27
COL18A1-201ENST00000342220 FAM189BP81408 668 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 TWF1Q12792 350 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 OTUD1Q5VV17 481 aaPredicted RBP13.34□□□□□ -0.27
COL18A1-201ENST00000342220 LVRNQ6Q4G3 990 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 ZNF670Q9BS34 389 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 IQCGQ9H095 443 aaKnown RBP13.34□□□□□ -0.27
COL18A1-201ENST00000342220 FBXW11Q9UKB1 542 aa13.34□□□□□ -0.27
COL18A1-201ENST00000342220 CLUHO75153 1309 aa13.33□□□□□ -0.27
COL18A1-201ENST00000342220 BUD23O43709 281 aaKnown RBP13.33□□□□□ -0.28
COL18A1-201ENST00000342220 TYROBPO43914 113 aa13.33□□□□□ -0.28
COL18A1-201ENST00000342220 FAM155BO75949 473 aa13.33□□□□□ -0.28
COL18A1-201ENST00000342220 VAV1P15498 845 aa13.33□□□□□ -0.28
COL18A1-201ENST00000342220 DPYSL2Q16555 572 aa13.33□□□□□ -0.28
COL18A1-201ENST00000342220 ATPAF2Q8N5M1 289 aa13.33□□□□□ -0.28
COL18A1-201ENST00000342220 WDR6Q9NNW5 1121 aaKnown RBP13.33□□□□□ -0.28
COL18A1-201ENST00000342220 PSMC3IPQ9P2W1 217 aaPredicted RBP13.33□□□□□ -0.28
COL18A1-201ENST00000342220 CTNNB1P35222 781 aa13.33□□□□□ -0.28
COL18A1-201ENST00000342220 BMPR2Q13873 1038 aa13.33□□□□□ -0.28
COL18A1-201ENST00000342220 CNKSR3Q6P9H4 555 aa13.33□□□□□ -0.28
COL18A1-201ENST00000342220 MPP5Q8N3R9 675 aa13.33□□□□□ -0.28
COL18A1-201ENST00000342220 KCTD13Q8WZ19 329 aa13.33□□□□□ -0.28
COL18A1-201ENST00000342220 NKD2Q969F2 451 aaPredicted RBP13.33□□□□□ -0.28
COL18A1-201ENST00000342220 ZC3H7BQ9UGR2 993 aaKnown RBP13.33□□□□□ -0.28
COL18A1-201ENST00000342220 SHOC2Q9UQ13 582 aa13.33□□□□□ -0.28
COL18A1-201ENST00000342220 ASB3Q9Y575 518 aa13.33□□□□□ -0.28
COL18A1-201ENST00000342220 ACTL7AQ9Y615 435 aa13.33□□□□□ -0.28
COL18A1-201ENST00000342220 PFDN1O60925 122 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 SEC24AO95486 1093 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 CBX6O95503 412 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 CXCL14O95715 111 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 MT-CYBP00156 380 aaPredicted RBP13.32□□□□□ -0.28
COL18A1-201ENST00000342220 MBL2P11226 248 aaPredicted RBP13.32□□□□□ -0.28
COL18A1-201ENST00000342220 STIP1P31948 543 aaKnown RBP13.32□□□□□ -0.28
COL18A1-201ENST00000342220 CD151P48509 253 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 CYP4F8P98187 520 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 VEPH1Q14D04 833 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 SLC45A4Q5BKX6 768 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 TXNDC8Q6A555 127 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 IL31Q6EBC2 164 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 TPGS1Q6ZTW0 290 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 PDZD4Q76G19 769 aaPredicted RBP13.32□□□□□ -0.28
COL18A1-201ENST00000342220 MON1AQ86VX9 555 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 LGI2Q8N0V4 545 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 C10orf82Q8WW14 230 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 RAB3IPQ96QF0 476 aaPredicted RBP13.32□□□□□ -0.28
COL18A1-201ENST00000342220 NDNQ99608 321 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 CFHR5Q9BXR6 569 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 TLR8Q9NR97 1041 aaKnown RBP13.32□□□□□ -0.28
COL18A1-201ENST00000342220 RABGEF1Q9UJ41 708 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 LCHNA4D1U4 455 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 H7C4K7 107 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 F9P00740 461 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 FGBP02675 491 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 PIRTP0C851 137 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 HSPA8P11142 646 aaKnown RBP13.32□□□□□ -0.28
COL18A1-201ENST00000342220 GJA8P48165 433 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 WDR5P61964 334 aaKnown RBP13.32□□□□□ -0.28
COL18A1-201ENST00000342220 PDK1Q15118 436 aa13.32□□□□□ -0.28
COL18A1-201ENST00000342220 ZRSR2Q15696 482 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms