RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CTSOP43234 321 aaPredicted RBP22.67■■□□□ 1.22
SDC3-202ENST00000339394 SULT2A1Q06520 285 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 GALNT2Q10471 571 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 UBXN2BQ14CS0 331 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 EMC10Q5UCC4 262 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 ARHGAP36Q6ZRI8 547 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 MS4A14Q96JA4 679 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 NELL2Q99435 816 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 HCN2Q9UL51 889 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 HPCAL4Q9UM19 191 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 SAR1BQ9Y6B6 198 aa22.67■■□□□ 1.22
SDC3-202ENST00000339394 FAM170BA6NMN3 283 aa22.66■■□□□ 1.22
SDC3-202ENST00000339394 STK25O00506 426 aa22.66■■□□□ 1.22
SDC3-202ENST00000339394 CES2O00748 559 aa22.66■■□□□ 1.22
SDC3-202ENST00000339394 ZNF185O15231 689 aa22.66■■□□□ 1.22
SDC3-202ENST00000339394 ZMPSTE24O75844 475 aa22.66■■□□□ 1.22
SDC3-202ENST00000339394 FGGP02679 453 aa22.66■■□□□ 1.22
SDC3-202ENST00000339394 TUBB4AP04350 444 aa22.66■■□□□ 1.22
SDC3-202ENST00000339394 DLDP09622 509 aaKnown RBP22.66■■□□□ 1.22
SDC3-202ENST00000339394 CHRNB1P11230 501 aa22.66■■□□□ 1.22
SDC3-202ENST00000339394 ECT2LQ008S8 904 aa22.66■■□□□ 1.22
SDC3-202ENST00000339394 RASGEF1CQ8N431 466 aa22.66■■□□□ 1.22
SDC3-202ENST00000339394 CYB5D2Q8WUJ1 264 aa22.66■■□□□ 1.22
SDC3-202ENST00000339394 OLFM3Q96PB7 478 aa22.66■■□□□ 1.22
SDC3-202ENST00000339394 RBM12Q9NTZ6 932 aaKnown RBP22.66■■□□□ 1.22
SDC3-202ENST00000339394 IPO11Q9UI26 975 aaKnown RBP22.66■■□□□ 1.22
SDC3-202ENST00000339394 RAD54BQ9Y620 910 aa22.66■■□□□ 1.22
SDC3-202ENST00000339394 J3KR12 359 aa22.65■■□□□ 1.22
SDC3-202ENST00000339394 NCAM2O15394 837 aa22.65■■□□□ 1.22
SDC3-202ENST00000339394 MX2P20592 715 aa22.65■■□□□ 1.22
SDC3-202ENST00000339394 GARSP41250 739 aaKnown RBP22.65■■□□□ 1.22
SDC3-202ENST00000339394 KIR2DL1P43626 348 aaPredicted RBP22.65■■□□□ 1.22
SDC3-202ENST00000339394 SEC13P55735 322 aa22.65■■□□□ 1.22
SDC3-202ENST00000339394 ARF5P84085 180 aa22.65■■□□□ 1.22
SDC3-202ENST00000339394 FZD5Q13467 585 aa22.65■■□□□ 1.22
SDC3-202ENST00000339394 PTPRNQ16849 979 aa22.65■■□□□ 1.22
SDC3-202ENST00000339394 FBXO43Q4G163 708 aa22.65■■□□□ 1.22
SDC3-202ENST00000339394 LINGO4Q6UY18 593 aa22.65■■□□□ 1.22
SDC3-202ENST00000339394 BZW1Q7L1Q6 419 aaKnown RBP22.65■■□□□ 1.22
SDC3-202ENST00000339394 ADAT2Q7Z6V5 191 aaKnown RBP22.65■■□□□ 1.22
SDC3-202ENST00000339394 LRRC49Q8IUZ0 686 aa22.65■■□□□ 1.22
SDC3-202ENST00000339394 ACTL9Q8TC94 416 aa22.65■■□□□ 1.22
SDC3-202ENST00000339394 UCMAQ8WVF2 138 aa22.65■■□□□ 1.22
SDC3-202ENST00000339394 RPL10LQ96L21 214 aaKnown RBP22.65■■□□□ 1.22
SDC3-202ENST00000339394 PLA2G4CQ9UP65 541 aa22.65■■□□□ 1.22
SDC3-202ENST00000339394 KIF2AO00139 706 aaPredicted RBP22.64■■□□□ 1.22
SDC3-202ENST00000339394 MAFKO60675 156 aa22.64■■□□□ 1.22
SDC3-202ENST00000339394 SLC34A2O95436 690 aa22.64■■□□□ 1.22
SDC3-202ENST00000339394 MT-CO1P00395 513 aa22.64■■□□□ 1.22
SDC3-202ENST00000339394 ASLP04424 464 aa22.64■■□□□ 1.22
SDC3-202ENST00000339394 OTUD4Q01804 1114 aaKnown RBP22.64■■□□□ 1.22
SDC3-202ENST00000339394 RETSATQ6NUM9 610 aa22.64■■□□□ 1.22
SDC3-202ENST00000339394 ATPAF2Q8N5M1 289 aa22.64■■□□□ 1.22
SDC3-202ENST00000339394 LRRN4Q8WUT4 740 aa22.64■■□□□ 1.22
SDC3-202ENST00000339394 LGMNQ99538 433 aa22.64■■□□□ 1.22
SDC3-202ENST00000339394 LMAN1LQ9HAT1 526 aa22.64■■□□□ 1.22
SDC3-202ENST00000339394 ZDHHC4Q9NPG8 344 aa22.64■■□□□ 1.22
SDC3-202ENST00000339394 TTC7AQ9ULT0 858 aaPredicted RBP22.64■■□□□ 1.22
SDC3-202ENST00000339394 ERVW-1Q9UQF0 538 aa22.64■■□□□ 1.22
SDC3-202ENST00000339394 ACTL7AQ9Y615 435 aa22.64■■□□□ 1.22
SDC3-202ENST00000339394 RNF40O75150 1001 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 CD160O95971 181 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 PDGFBP01127 241 aaPredicted RBP22.63■■□□□ 1.21
SDC3-202ENST00000339394 CHRM1P11229 460 aaPredicted RBP22.63■■□□□ 1.21
SDC3-202ENST00000339394 STK19P49842 368 aaPredicted RBP22.63■■□□□ 1.21
SDC3-202ENST00000339394 PDK1Q15118 436 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 LONRF2Q1L5Z9 754 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 C2orf27AQ580R0 203 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 DGKKQ5KSL6 1271 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 EGFLAMQ63HQ2 1017 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 LEKR1Q6ZMV7 388 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 ZNF513Q8N8E2 541 aaPredicted RBP22.63■■□□□ 1.21
SDC3-202ENST00000339394 CCNYQ8ND76 341 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 MRGPRX3Q96LB0 322 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 FAM118BQ9BPY3 351 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 MFSD1Q9H3U5 465 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 PDFQ9HBH1 243 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 SLCO3A1Q9UIG8 710 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 R3HDM2Q9Y2K5 976 aaKnown RBP22.63■■□□□ 1.21
SDC3-202ENST00000339394 ZSCAN5CA6NGD5 496 aaPredicted RBP22.63■■□□□ 1.21
SDC3-202ENST00000339394 PRAMEF11O60813 436 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 HNRNPLP14866 589 aaKnown RBP eCLIP22.63■■□□□ 1.212e-7■■■■■ 40.2
SDC3-202ENST00000339394 TIE1P35590 1138 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 IL10RBQ08334 325 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 NOMO1Q15155 1222 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 ZC3H18Q86VM9 953 aaKnown RBP22.63■■□□□ 1.21
SDC3-202ENST00000339394 TTC13Q8NBP0 860 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 FLCNQ8NFG4 579 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 PJA1Q8NG27 643 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 ACTRT1Q8TDG2 376 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 KCNV2Q8TDN2 545 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 ZNF592Q92610 1267 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 HDAC11Q96DB2 347 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 MYO19Q96H55 970 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 TSGA13Q96PP4 275 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 ACOX2Q99424 681 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 OSBPL6Q9BZF3 934 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 SP110Q9HB58 689 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 THAP10Q9P2Z0 257 aaPredicted RBP22.63■■□□□ 1.21
SDC3-202ENST00000339394 SLC25A13Q9UJS0 675 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms