RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 KLHL8Q9P2G9 620 aaPredicted RBP15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 TBC1D14Q9P2M4 693 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 HPCAL4Q9UM19 191 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 CCL26Q9Y258 94 aa15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 HELZP42694 1942 aaKnown RBP15.25■□□□□ 0.03
CCDC88C-202ENST00000334448 TNRC18O15417 2968 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 SUN1O94901 812 aa15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 LUC7L3O95232 432 aaKnown RBP15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 PENKP01210 267 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 MLNP12872 115 aa15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 CD68P34810 354 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 OXCT1P55809 520 aa15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 ADAM15Q13444 863 aa15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 UAP1Q16222 522 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 HIF1AQ16665 826 aa15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 CTC1Q2NKJ3 1217 aa15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 ALS2CLQ60I27 953 aa15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 POTEHQ6S545 545 aa15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 NPAS3Q8IXF0 933 aa15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 CFAP52Q8N1V2 620 aa15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 C12orf76Q8N812 135 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 ZNF557Q8N988 423 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 TDRD5Q8NAT2 981 aaKnown RBP15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 TSEN2Q8NCE0 465 aaKnown RBP15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 ITFG1Q8TB96 612 aa15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 TMA16Q96EY4 203 aaKnown RBP15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 ZNF419Q96HQ0 510 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 FCRL5Q96RD9 977 aa15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 EPB41L4BQ9H329 900 aa15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 PABPC3Q9H361 631 aaKnown RBP15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 XAB2Q9HCS7 855 aaKnown RBP15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 MARK1Q9P0L2 795 aa15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 OR51B4Q9Y5P0 310 aa15.24■□□□□ 0.03
CCDC88C-202ENST00000334448 PDE4DIPQ5VU43 2346 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 TCRBV7S3A2A0A539 114 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 SLC9A3R1O14745 358 aaPredicted RBP15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 ALOX15BO15296 676 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 JCHAINP01591 159 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 RHOCP08134 193 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 NUDT17P0C025 328 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 TSHRP16473 764 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 FSHRP23945 695 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 HSD17B3P37058 310 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 RENBPP51606 427 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 PMS2P54278 862 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 ARL4CP56559 192 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 RFTN1Q14699 578 aaPredicted RBP15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 RARS2Q5T160 578 aaKnown RBP15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 KCTD11Q693B1 232 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 ALG1LQ6GMV1 187 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 LRIG3Q6UXM1 1119 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 CENPUQ71F23 418 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 PID1Q7Z2X4 250 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 ARID3BQ8IVW6 561 aaPredicted RBP15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 CELF5Q8N6W0 485 aaKnown RBP15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 ZSWIM3Q96MP5 696 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 GDAP1L1Q96MZ0 367 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 RBM15Q96T37 977 aaKnown RBP eCLIP15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 GORASP1Q9BQQ3 440 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 SP110Q9HB58 689 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 ATP8A1Q9Y2Q0 1164 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 CHD5Q8TDI0 1954 aa15.23■□□□□ 0.03
CCDC88C-202ENST00000334448 ZBTB24O43167 697 aaPredicted RBP15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 KDELR3O43731 214 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 TBL1XO60907 577 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 AP2A1O95782 977 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 APRTP07741 180 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 ABHD2P08910 425 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 PSMB4P28070 264 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 ACVRL1P37023 503 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 PLK1P53350 603 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 SLC14A2Q15849 920 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 CFAP58Q5T655 872 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 FYB2Q5VWT5 728 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 ZNF534Q76KX8 674 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 PDIK1LQ8N165 341 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 DCAF4L2Q8NA75 395 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 OR52K2Q8NGK3 314 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 FIBINQ8TAL6 211 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 LRRC39Q96DD0 335 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 ALG14Q96F25 216 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 LMLNQ96KR4 655 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 TTC25Q96NG3 672 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 ASB16Q96NS5 453 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 SERPINB12Q96P63 405 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 SMG9Q9H0W8 520 aaKnown RBP15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 ACBD3Q9H3P7 528 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 GLOD4Q9HC38 313 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 FAM53CQ9NYF3 392 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 SEPT10Q9P0V9 454 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 RSPH14Q9UHP6 348 aa15.22■□□□□ 0.03
CCDC88C-202ENST00000334448 A0A0D9SEW6 157 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 J3KR12 359 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 TRDMT1O14717 391 aaKnown RBP15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 LINC01565O15544 149 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 PSMD3O43242 534 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 TSPAN3O60637 253 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 ZMPSTE24O75844 475 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 TTC4O95801 387 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms