RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 PRKCEQ02156 737 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 ZNF829Q3KNS6 432 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 ZBED5Q49AG3 693 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 TTC33Q6PID6 262 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 CHSY3Q70JA7 882 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 TMEM126BQ8IUX1 230 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 HIPK3Q9H422 1215 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 SOX17Q9H6I2 414 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 PCDHGC3Q9UN70 934 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 DOCK5Q9H7D0 1870 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 TK2O00142 265 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 GPR25O00155 361 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 GRID2O43424 1007 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 TPST1O60507 370 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 OXSR1O95747 527 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 EGFRP00533 1210 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 TFEBP19484 476 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 CDH3P22223 829 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 PPARGP37231 505 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 ASPAP45381 313 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 NUMBP49757 651 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 JAK3P52333 1124 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 TRAF2Q12933 501 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 TRPC3Q13507 836 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 ARL13AQ5H913 290 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 NHSL2Q5HYW2 709 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 STXBP5Q5T5C0 1151 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 C6orf183Q5T699 404 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 TMEM214Q6NUQ4 689 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 SNX29P2Q8IUI4 249 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 OFCC1Q8IZS5 231 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 ARNTL2Q8WYA1 636 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 BORCS5Q969J3 196 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 SLC39A3Q9BRY0 314 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 ZNF839A8K0R7 811 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 DGAT1O75907 488 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 RGS7P49802 495 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 CNTN2Q02246 1040 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 NEDD8Q15843 81 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 ZNF699Q32M78 642 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 PRAMEF18Q5VWM3 479 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 OR6B2Q6IFH4 312 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 SLC2A7Q6PXP3 512 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 BTLAQ7Z6A9 289 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 SLC4A11Q8NBS3 891 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 MCUQ8NE86 351 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 FNIP1Q8TF40 1166 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 LRRC39Q96DD0 335 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 ILKAPQ9H0C8 392 aaPredicted RBP13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 FAM96AQ9H5X1 160 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 EFCAB1Q9HAE3 211 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 ASNSD1Q9NWL6 643 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 SMOXQ9NWM0 555 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 SYBUQ9NX95 663 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 KIAA1522Q9P206 1035 aaPredicted RBP13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 TXNDC16Q9P2K2 825 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 SLC8A2Q9UPR5 921 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 COPG1Q9Y678 874 aaKnown RBP13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 SQORQ9Y6N5 450 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 CCDC78A2IDD5 438 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 USP12O75317 370 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 KCNH1O95259 989 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 BMP10O95393 424 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 NAGLUP54802 743 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 NR1D2Q14995 579 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 FAM47CQ5HY64 1035 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 SEL1L3Q68CR1 1132 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 ZC3H7AQ8IWR0 971 aaKnown RBP13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 SPATA6LQ8N4H0 392 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 ACMSDQ8TDX5 336 aa13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 FCRL3Q96P31 734 aaPredicted RBP13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 NPLQ9BXD5 320 aaPredicted RBP13.69□□□□□ -0.22
CCDC88C-201ENST00000331194 PRORSD1PA6NEY8 169 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 M0QYV0 167 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 MCF2P10911 925 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 PSME3P61289 254 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 PRKCQQ04759 706 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 RAB39AQ14964 217 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 METTL21CQ5VZV1 264 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 DLG3Q92796 817 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 RTP4Q96DX8 246 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 FBXL20Q96IG2 436 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 LGMNQ99538 433 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 POLR1BQ9H9Y6 1135 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 FAM32AQ9Y421 112 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 PCDHGA7Q9Y5G6 932 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 STYXL1Q9Y6J8 313 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 TRIP11Q15643 1979 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 A0A096LPK6 155 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 C1orf232A0A0U1RR37 186 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 BCLAF3A2AJT9 711 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 HDAC3O15379 428 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 AKAP10O43572 662 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 TRIM13O60858 407 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 MICAL2O94851 1124 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 INHBBP09529 407 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 RCVRNP35243 200 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 CAP2P40123 477 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 GRIA3P42263 894 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 MLLT10P55197 1068 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms