RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 PAEPP09466 180 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 CHRM1P11229 460 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ABRQ12979 859 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 MPP3Q13368 585 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 TAF5Q15542 800 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ITFG1Q8TB96 612 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 KBTBD7Q8WVZ9 684 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 PCDHGB1Q9Y5G3 927 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 CCDC85CA6NKD9 419 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 KRBOX1C9JBD0 128 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 YKT6O15498 198 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ZNF14P17017 642 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 S100PP25815 95 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 GDI2P50395 445 aaKnown RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 RAB5CP51148 216 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 TAGLNQ01995 201 aaKnown RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 GNASQ5JWF2 1037 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 KDELC2Q7Z4H8 507 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 DNAJA4Q8WW22 397 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 PGBD4Q96DM1 585 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 MAP3K14Q99558 947 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 C7orf25Q9BPX7 421 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 CLPXO76031 633 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 TMEM253P0C7T8 217 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 LCP1P13796 627 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 EIF2AK2P19525 551 aaKnown RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 NCS1P62166 190 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 DYNLL1P63167 89 aaKnown RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ATP2C1P98194 919 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 BTKQ06187 659 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 CCNYL2Q5T2Q4 361 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 CCSAPQ6IQ19 270 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 UBE2R2Q712K3 238 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SZRD1Q7Z422 152 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 MFSD2AQ8NA29 543 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 RAD51AP1Q96B01 352 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 CERS2Q96G23 380 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 RNF145Q96MT1 663 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ABCG8Q9H221 673 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 BLZF1Q9H2G9 400 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SENP3Q9H4L4 574 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 FAM124BQ9H5Z6 455 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 POLR3HQ9Y535 204 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 UGGT1Q9NYU2 1555 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 FRMPD4Q14CM0 1322 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 FAM20BO75063 409 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 HMGCRP04035 888 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 YWHAZP63104 245 aaKnown RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 MYBPC3Q14896 1274 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 CHRNA2Q15822 529 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 TTMPQ5BVD1 217 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 NKAPLQ5M9Q1 402 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 RBM48Q5RL73 367 aaKnown RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 TYW3Q6IPR3 259 aaKnown RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 LMBR1LQ6UX01 489 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 HIPK1Q86Z02 1210 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 METTL25Q8N6Q8 603 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 OR52L1Q8NGH7 329 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 GANCQ8TET4 914 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SLC9A7Q96T83 725 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SLC39A3Q9BRY0 314 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 RTKNQ9BST9 563 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 DCUN1D5Q9BTE7 237 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 CST11Q9H112 138 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 KIAA1257Q9ULG3 409 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SAMD4AQ9UPU9 718 aaKnown RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ZNF532Q9HCE3 1301 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 CEP170Q5SW79 1584 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 NOS1P29475 1434 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 A0A1B0GVI7 797 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SLC30A4O14863 429 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SLC28A2O43868 658 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ARF4P18085 180 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 HUNKP57058 714 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 MOGQ16653 247 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 REPS2Q8NFH8 660 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 BPIFB6Q8NFQ5 453 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 IPCEF1Q8WWN9 437 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SYT4Q9H2B2 425 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 RBM12Q9NTZ6 932 aaKnown RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 MAGEL2Q9UJ55 1249 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ATP10BO94823 1461 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 DHRS12A0PJE2 317 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 EIF1AYO14602 144 aaKnown RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 IPO13O94829 963 aaKnown RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SERPINA3P01011 423 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ATP6V1B2P21281 511 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 GNA15P30679 374 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SLC15A1P46059 708 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 EIF1AXP47813 144 aaKnown RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 HES5Q5TA89 166 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 DCAF15Q66K64 600 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ZNF517Q6ZMY9 492 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 CDK5RAP1Q96SZ6 601 aaKnown RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 CDCA7Q9BWT1 371 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 EHD4Q9H223 541 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 KMT5AQ9NQR1 393 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ITGA11Q9UKX5 1188 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 PHF8Q9UPP1 1060 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms