RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 TNFAIP1Q13829 316 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 SPIDRQ14159 915 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 TRIM25Q14258 630 aaKnown RBP4.8□□□□□ -1.64
CD44-202ENST00000278385 PCOLCEQ15113 449 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 PROSER3Q2NL68 480 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 TRIM71Q2Q1W2 868 aaKnown RBP4.8□□□□□ -1.64
CD44-202ENST00000278385 PRICKLE4Q2TBC4 344 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 CRY2Q49AN0 593 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 FAXCQ5TGI0 409 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 AGBL4Q5VU57 503 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 RRAGBQ5VZM2 374 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 CAVIN1Q6NZI2 390 aaKnown RBP4.8□□□□□ -1.64
CD44-202ENST00000278385 WDR93Q6P2C0 686 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 TRAT1Q6PIZ9 186 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 MEX3BQ6ZN04 569 aaKnown RBP4.8□□□□□ -1.64
CD44-202ENST00000278385 MON1AQ86VX9 555 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 SYNE4Q8N205 404 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 HDDC3Q8N4P3 179 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 SH2D3CQ8N5H7 860 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 CELF5Q8N6W0 485 aaKnown RBP4.8□□□□□ -1.64
CD44-202ENST00000278385 POMGNT2Q8NAT1 580 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 DRAXINQ8NBI3 349 aaPredicted RBP4.8□□□□□ -1.64
CD44-202ENST00000278385 NEK9Q8TD19 979 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 FAM216AQ8WUB2 273 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 KBTBD7Q8WVZ9 684 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 MBD6Q96DN6 1003 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 SIPA1Q96FS4 1042 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 PDLIM5Q96HC4 596 aaKnown RBP4.8□□□□□ -1.64
CD44-202ENST00000278385 SNX27Q96L92 541 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 C20orf173Q96LM9 149 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 WDR92Q96MX6 357 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 SAMD11Q96NU1 681 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 TRAPPC9Q96Q05 1148 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 RAB3IPQ96QF0 476 aaPredicted RBP4.8□□□□□ -1.64
CD44-202ENST00000278385 CRAMP1Q96RY5 1269 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 RBM15Q96T37 977 aaKnown RBP eCLIP4.8□□□□□ -1.64
CD44-202ENST00000278385 FUZQ9BT04 418 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 MYL10Q9BUA6 226 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 TRIM54Q9BYV2 358 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 DPH1Q9BZG8 443 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 KRT23Q9C075 422 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 FTOQ9C0B1 505 aaKnown RBP eCLIP4.8□□□□□ -1.64
CD44-202ENST00000278385 REXO4Q9GZR2 422 aaKnown RBP4.8□□□□□ -1.64
CD44-202ENST00000278385 ANKRD2Q9GZV1 360 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 BRD8Q9H0E9 1235 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 PDE11AQ9HCR9 933 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 SARS2Q9NP81 518 aaKnown RBP4.8□□□□□ -1.64
CD44-202ENST00000278385 ZBTB40Q9NUA8 1239 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 POLR3BQ9NW08 1133 aaPredicted RBP4.8□□□□□ -1.64
CD44-202ENST00000278385 ZNHIT6Q9NWK9 470 aaKnown RBP4.8□□□□□ -1.64
CD44-202ENST00000278385 HSF4Q9ULV5 492 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 EXOC7Q9UPT5 735 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 TRAF3IP3Q9Y228 551 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 KLHL20Q9Y2M5 609 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 DERAQ9Y315 318 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 CAB39Q9Y376 341 aaPredicted RBP4.8□□□□□ -1.64
CD44-202ENST00000278385 TCAF1Q9Y4C2 921 aa4.8□□□□□ -1.64
CD44-202ENST00000278385 UBN2Q6ZU65 1347 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 MYPNQ86TC9 1320 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 SH3TC1Q8TE82 1336 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 UBR2Q8IWV8 1755 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 A0A1W2PQ09 198 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 LACTBL1A8MY62 500 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 SGK1O00141 431 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 WDR46O15213 610 aaKnown RBP4.79□□□□□ -1.64
CD44-202ENST00000278385 TP73O15350 636 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 CCP110O43303 1012 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 CDC14BO60729 498 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 ENTPD3O75355 529 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 E2F6O75461 281 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 TRIM16O95361 564 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 GCNT3O95395 438 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 GGPS1O95749 300 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 GSPT1P15170 499 aaKnown RBP4.79□□□□□ -1.64
CD44-202ENST00000278385 FERP16591 822 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 CR2P20023 1033 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 KELP23276 732 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 GCH1P30793 250 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 PGM1P36871 562 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 RPS19P39019 145 aaKnown RBP4.79□□□□□ -1.64
CD44-202ENST00000278385 PAFAH1B1P43034 410 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 ATP5OP48047 213 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 FLT3LGP49771 235 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 PRELPP51888 382 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 RPP30P78346 268 aaKnown RBP4.79□□□□□ -1.64
CD44-202ENST00000278385 SCAPQ12770 1279 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 TRADDQ15628 312 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 KRT24Q2M2I5 525 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 TYSND1Q2T9J0 566 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 SPATS1Q496A3 300 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 KHDC1LQ5JSQ8 128 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 FAM69AQ5T7M9 428 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 ADALQ6DHV7 355 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 ANGPTL8Q6UXH0 198 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 FAM83HQ6ZRV2 1179 aaPredicted RBP4.79□□□□□ -1.64
CD44-202ENST00000278385 USP49Q70CQ1 688 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 UNC13DQ70J99 1090 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 LRRC8DQ7L1W4 858 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 RRAGAQ7L523 313 aa4.79□□□□□ -1.64
CD44-202ENST00000278385 RABEPKQ7Z6M1 372 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms