RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 SLC44A4Q53GD3 710 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 SLC45A4Q5BKX6 768 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 PIGZQ86VD9 579 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 FBXL16Q8N461 479 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 TINF2Q9BSI4 451 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 C6orf62Q9GZU0 229 aaPredicted RBP11.64□□□□□ -0.55
USP53-201ENST00000274030 ADGRA3Q8IWK6 1321 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 C1orf232A0A0U1RR37 186 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 HACD1B0YJ81 288 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 FFAR3O14843 346 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 GPR42O15529 346 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 PEX11AO75192 247 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 POLR2EP19388 210 aaKnown RBP11.64□□□□□ -0.55
USP53-201ENST00000274030 NFKB1P19838 968 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 ATP6V1C1P21283 382 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 PSMA3P25788 255 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 CDC25CP30307 473 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 S100A3P33764 101 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 HNF4AP41235 474 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 RHBDL3P58872 404 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 RPL7AP62424 266 aaKnown RBP11.64□□□□□ -0.55
USP53-201ENST00000274030 ATAD3BQ5T9A4 648 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 FBXO30Q8TB52 745 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 ZFYVE1Q9HBF4 777 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 CYLDQ9NQC7 956 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 GEMIN8Q9NWZ8 242 aaKnown RBP11.64□□□□□ -0.55
USP53-201ENST00000274030 SYBUQ9NX95 663 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 CHKBQ9Y259 395 aa11.64□□□□□ -0.55
USP53-201ENST00000274030 RCCD1A6NED2 376 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 SIGLEC16A6NMB1 481 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 NPR3P17342 541 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 GTF2E2P29084 291 aaKnown RBP11.63□□□□□ -0.55
USP53-201ENST00000274030 ATP12AP54707 1039 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 IL2P60568 153 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 PFKPQ01813 784 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 SLC34A1Q06495 639 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 PSTKQ8IV42 348 aaKnown RBP11.63□□□□□ -0.55
USP53-201ENST00000274030 DENND1CQ8IV53 801 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 EFCAB3Q8N7B9 438 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 TMEM161BQ8NDZ6 487 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 ATXN2LQ8WWM7 1075 aaKnown RBP11.63□□□□□ -0.55
USP53-201ENST00000274030 IKZF4Q9H2S9 585 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 KCNMB3Q9NPA1 279 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 PIK3C2BO00750 1634 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 UMODL1Q5DID0 1318 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 CYP3A4P08684 503 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 UMPSP11172 480 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 BMP6P22004 513 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 PTPN3P26045 913 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 ACSM2AQ08AH3 577 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 MAD2L1Q13257 205 aaPredicted RBP11.63□□□□□ -0.55
USP53-201ENST00000274030 IL17AQ16552 155 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 ACSM2BQ68CK6 577 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 CASP12Q6UXS9 341 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 CERS5Q8N5B7 392 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 CAMKK1Q8N5S9 505 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 ZCCHC2Q9C0B9 1178 aaKnown RBP11.63□□□□□ -0.55
USP53-201ENST00000274030 ASB8Q9H765 288 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 NFKBIL1Q9UBC1 381 aaPredicted RBP11.63□□□□□ -0.55
USP53-201ENST00000274030 INVSQ9Y283 1065 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 CDK16Q00536 496 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 CATSPERGQ6ZRH7 1159 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 COMMD2Q86X83 199 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 ELMO1Q92556 727 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 APBB2Q92870 758 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 FAM163AQ96GL9 167 aaPredicted RBP11.63□□□□□ -0.55
USP53-201ENST00000274030 ABCG8Q9H221 673 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 AMHP03971 560 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 IGFBP4P22692 258 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 LRPAP1P30533 357 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 RPL22P35268 128 aaKnown RBP11.63□□□□□ -0.55
USP53-201ENST00000274030 CAPSQ13938 189 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 ARMCX4Q5H9R4 360 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 SH3RF1Q7Z6J0 888 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 ITFG1Q8TB96 612 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 SOCS4Q8WXH5 440 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 MIEF2Q96C03 454 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 PANX3Q96QZ0 392 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 SH3GL2Q99962 352 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 CDT1Q9H211 546 aa11.63□□□□□ -0.55
USP53-201ENST00000274030 SMIM10L2AP0DMW4 78 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 SMIM10L2BP0DMW5 78 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 GOT1P17174 413 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 AMPD2Q01433 879 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 ATP1A4Q13733 1029 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 CNGA2Q16280 664 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 TTMPQ5BVD1 217 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 MIIPQ5JXC2 388 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 VGLL2Q8N8G2 317 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 HELQQ8TDG4 1101 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 LENG9Q96B70 501 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 LGMNQ99538 433 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 HDHD2Q9H0R4 259 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 DIP2BQ9P265 1576 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 A0A0A0MRY4 1105 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 TRIM43BA6NCK2 446 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 COX7A2P14406 83 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 SERPINA4P29622 427 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 INSCQ1MX18 579 aa11.62□□□□□ -0.55
USP53-201ENST00000274030 RSBN1Q5VWQ0 802 aaPredicted RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms