RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 PCDHGB3Q9Y5G1 929 aa11.55□□□□□ -0.56
PTPN4-201ENST00000263708 PZPP20742 1482 aa11.55□□□□□ -0.56
PTPN4-201ENST00000263708 IFNA6P05013 189 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 BUD31P41223 144 aaPredicted RBP11.54□□□□□ -0.56
PTPN4-201ENST00000263708 TUBP50607 506 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 PTPN5P54829 565 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 ATG9AQ7Z3C6 839 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 LGI2Q8N0V4 545 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 MYOZ2Q9NPC6 264 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 KCNH7Q9NS40 1196 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 CLASP1Q7Z460 1538 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 PTPRKQ15262 1439 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 OGTO15294 1046 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 SGPL1O95470 568 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 NPR3P17342 541 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 TCEAL6Q6IPX3 200 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 PARP8Q8N3A8 854 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 SLC4A11Q8NBS3 891 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 VPS35Q96QK1 796 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 NECTIN3Q9NQS3 549 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 CATSPERZQ9NTU4 200 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 MYRFQ9Y2G1 1151 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 GRXCR2A6NFK2 248 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 NTRK1P04629 796 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 HNF4AP41235 474 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 ZNF543Q08ER8 600 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 BTG3Q14201 252 aaPredicted RBP11.54□□□□□ -0.56
PTPN4-201ENST00000263708 RFX4Q33E94 735 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 CES5AQ6NT32 575 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 KBTBD2Q8IY47 623 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 TPCN2Q8NHX9 752 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 CHID1Q9BWS9 393 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 TRIM64BA6NI03 449 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 NOS1APO75052 506 aaPredicted RBP11.54□□□□□ -0.56
PTPN4-201ENST00000263708 RAET1GQ6H3X3 334 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 CHRDL2Q6WN34 429 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 EXOC3L1Q86VI1 746 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 ZNF615Q8N8J6 731 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 NMRAL1Q9HBL8 299 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 WHRNQ9P202 907 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 NUDT5Q9UKK9 219 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 ATXN1P54253 815 aaKnown RBP11.54□□□□□ -0.56
PTPN4-201ENST00000263708 QRFPRQ96P65 431 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 PANX3Q96QZ0 392 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 MKNK1Q9BUB5 465 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 IRX2Q9BZI1 471 aaPredicted RBP11.54□□□□□ -0.56
PTPN4-201ENST00000263708 NR2F1P10589 423 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 CDC42P60953 191 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 TIMM50Q3ZCQ8 353 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 OAFQ86UD1 273 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 COL23A1Q86Y22 540 aaPredicted RBP11.54□□□□□ -0.56
PTPN4-201ENST00000263708 PCSK9Q8NBP7 692 aaKnown RBP11.54□□□□□ -0.56
PTPN4-201ENST00000263708 FBXO30Q8TB52 745 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 MTMR4Q9NYA4 1195 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 ETS1P14921 441 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 KCNA5P22460 613 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 VBP1P61758 197 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 PTGISQ16647 500 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 N4BP2L1Q5TBK1 243 aaPredicted RBP11.54□□□□□ -0.56
PTPN4-201ENST00000263708 PPP1R13LQ8WUF5 828 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 PRCCQ92733 491 aaPredicted RBP11.54□□□□□ -0.56
PTPN4-201ENST00000263708 C9orf16Q9BUW7 83 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 C1orf50Q9BV19 199 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 PCDH12Q9NPG4 1184 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 IKZF3Q9UKT9 509 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 ZNF780BQ9Y6R6 833 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 SEMA3DO95025 777 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 PGK1P00558 417 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 ITPKBP27987 946 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 GMFBP60983 142 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 AMIGO1Q86WK6 493 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 ADHFE1Q8IWW8 467 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 TEX47Q8TBZ9 253 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 DDX43Q9NXZ2 648 aaKnown RBP11.54□□□□□ -0.56
PTPN4-201ENST00000263708 ZFYVE16Q7Z3T8 1539 aa11.54□□□□□ -0.56
PTPN4-201ENST00000263708 RSL1D1O76021 490 aaKnown RBP11.53□□□□□ -0.56
PTPN4-201ENST00000263708 APOC1P02654 83 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 PPIDQ08752 370 aaKnown RBP11.53□□□□□ -0.56
PTPN4-201ENST00000263708 STK4Q13043 487 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 ACAP1Q15027 740 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 R3HDM1Q15032 1099 aaKnown RBP11.53□□□□□ -0.56
PTPN4-201ENST00000263708 NRF1Q16656 503 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 MPPE1Q53F39 396 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 GRTP1Q5TC63 336 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 ISLR2Q6UXK2 745 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 LMAN2LQ9H0V9 348 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 SHANK2Q9UPX8 1470 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 A0A0B4J269 797 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 PCP4L1A6NKN8 68 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 CHN2P52757 468 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 TMED8Q6PL24 325 aaPredicted RBP11.53□□□□□ -0.56
PTPN4-201ENST00000263708 CCNI2Q6ZMN8 369 aaPredicted RBP11.53□□□□□ -0.56
PTPN4-201ENST00000263708 LRRC70Q7Z2Q7 622 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 LRRC17Q8N6Y2 441 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 Q96MT0 163 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 ZNF70Q9UC06 446 aaPredicted RBP11.53□□□□□ -0.56
PTPN4-201ENST00000263708 TIMM13Q9Y5L4 95 aaPredicted RBP11.53□□□□□ -0.56
PTPN4-201ENST00000263708 POLR1AO95602 1720 aaPredicted RBP11.53□□□□□ -0.56
PTPN4-201ENST00000263708 NEK3P51956 506 aa11.53□□□□□ -0.56
PTPN4-201ENST00000263708 CYB5D1Q6P9G0 228 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms