RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 GJD2Q9UKL4 321 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 TIMM13Q9Y5L4 95 aaPredicted RBP13.24□□□□□ -0.29
SNX1-201ENST00000261889 COMMD3-BMI1R4GMX3 469 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 IQCA1LA6NCM1 817 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 MAFO75444 373 aaPredicted RBP13.24□□□□□ -0.29
SNX1-201ENST00000261889 TIPRLO75663 272 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 CDK4P11802 303 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 ARF4P18085 180 aaPredicted RBP13.24□□□□□ -0.29
SNX1-201ENST00000261889 MTTPP55157 894 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 GRM3Q14832 879 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 POU6F1Q14863 301 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 TMEM132DQ14C87 1099 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 IFNEQ86WN2 208 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 PHF21BQ96EK2 531 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 CERS2Q96G23 380 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 LRCH3Q96II8 777 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 ZMAT2Q96NC0 199 aaKnown RBP13.24□□□□□ -0.29
SNX1-201ENST00000261889 CCT7Q99832 543 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 NT5C1AQ9BXI3 368 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 CDH19Q9H159 772 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 NOL11Q9H8H0 719 aaKnown RBP13.24□□□□□ -0.29
SNX1-201ENST00000261889 GPAMQ9HCL2 828 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 FBRSL1Q9HCM7 1045 aaKnown RBP13.24□□□□□ -0.29
SNX1-201ENST00000261889 DPP3Q9NY33 737 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 AURKCQ9UQB9 309 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 ATP6V1G1O75348 118 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 BEST1O76090 585 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 NMBRP28336 390 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 PABPC1LQ4VXU2 614 aaKnown RBP13.24□□□□□ -0.29
SNX1-201ENST00000261889 BNC2Q6ZN30 1099 aaPredicted RBP13.24□□□□□ -0.29
SNX1-201ENST00000261889 GADL1Q6ZQY3 521 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 DEFB106AQ8N104 65 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 LRRC43Q8N309 656 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 LHX5Q9H2C1 402 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 SNTG2Q9NY99 539 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 EGFL7Q9UHF1 273 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 ZNF180Q9UJW8 692 aa13.24□□□□□ -0.29
SNX1-201ENST00000261889 ZNF638Q14966 1978 aaKnown RBP13.24□□□□□ -0.29
SNX1-201ENST00000261889 A0A0J9YVX5 310 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 TTC24A2A3L6 582 aaPredicted RBP13.23□□□□□ -0.29
SNX1-201ENST00000261889 ZNF839A8K0R7 811 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 SPAG6O75602 509 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 CSE1LP55060 971 aaKnown RBP13.23□□□□□ -0.29
SNX1-201ENST00000261889 TARBP2Q15633 366 aaKnown RBP13.23□□□□□ -0.29
SNX1-201ENST00000261889 ANO4Q32M45 955 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 LRRC8BQ6P9F7 803 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 OTOP3Q7RTS5 596 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 ANKRD23Q86SG2 305 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 OFCC1Q8IZS5 231 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 SLC2A14Q8TDB8 520 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 FNIP1Q8TF40 1166 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 EDEM1Q92611 657 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 HAPLN3Q96S86 360 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 GBA2Q9HCG7 927 aaPredicted RBP13.23□□□□□ -0.29
SNX1-201ENST00000261889 VCANP13611 3396 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 WDR81Q562E7 1941 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 G3V2L1 256 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 PIGRP01833 764 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 CHRM3P20309 590 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 SULT1E1P49888 294 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 PLIN5Q00G26 463 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 ZPBP2Q6X784 338 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 KYQ8NBH2 561 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 SEPT1Q8WYJ6 367 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 ARMC7Q9H6L4 198 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 CHST12Q9NRB3 414 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 EVLQ9UI08 416 aaPredicted RBP13.23□□□□□ -0.29
SNX1-201ENST00000261889 NUDT5Q9UKK9 219 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 RUVBL2Q9Y230 463 aaKnown RBP13.23□□□□□ -0.29
SNX1-201ENST00000261889 MT-CYBP00156 380 aaPredicted RBP13.23□□□□□ -0.29
SNX1-201ENST00000261889 PSMC3P17980 439 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 SLC6A3Q01959 620 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 ADIGQ0VDE8 80 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 CYLC2Q14093 348 aaPredicted RBP13.23□□□□□ -0.29
SNX1-201ENST00000261889 USP10Q14694 798 aaKnown RBP13.23□□□□□ -0.29
SNX1-201ENST00000261889 CDKL3Q8IVW4 592 aaPredicted RBP13.23□□□□□ -0.29
SNX1-201ENST00000261889 TUT1Q9H6E5 874 aaKnown RBP13.23□□□□□ -0.29
SNX1-201ENST00000261889 NMRAL1Q9HBL8 299 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 ITGA11Q9UKX5 1188 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 EFR3BQ9Y2G0 817 aa13.23□□□□□ -0.29
SNX1-201ENST00000261889 CDH23Q9H251 3354 aa13.22□□□□□ -0.29
SNX1-201ENST00000261889 TRDMT1O14717 391 aaKnown RBP13.22□□□□□ -0.29
SNX1-201ENST00000261889 ENDOD1O94919 500 aa13.22□□□□□ -0.29
SNX1-201ENST00000261889 MBTD1Q05BQ5 628 aa13.22□□□□□ -0.29
SNX1-201ENST00000261889 NIPAL4Q0D2K0 466 aa13.22□□□□□ -0.29
SNX1-201ENST00000261889 C16orf72Q14CZ0 275 aa13.22□□□□□ -0.29
SNX1-201ENST00000261889 BOLA3Q53S33 107 aa13.22□□□□□ -0.29
SNX1-201ENST00000261889 SH2D4BQ5SQS7 431 aa13.22□□□□□ -0.29
SNX1-201ENST00000261889 CLEC6AQ6EIG7 209 aa13.22□□□□□ -0.29
SNX1-201ENST00000261889 PARP8Q8N3A8 854 aa13.22□□□□□ -0.29
SNX1-201ENST00000261889 RDM1Q8NG50 284 aa13.22□□□□□ -0.29
SNX1-201ENST00000261889 DGCR14Q96DF8 476 aaKnown RBP13.22□□□□□ -0.29
SNX1-201ENST00000261889 TMEM79Q9BSE2 394 aa13.22□□□□□ -0.29
SNX1-201ENST00000261889 BCO2Q9BYV7 579 aa13.22□□□□□ -0.29
SNX1-201ENST00000261889 RHOBTB2Q9BYZ6 727 aa13.22□□□□□ -0.29
SNX1-201ENST00000261889 TRPC7Q9HCX4 862 aa13.22□□□□□ -0.29
SNX1-201ENST00000261889 EBF1Q9UH73 591 aa13.22□□□□□ -0.29
SNX1-201ENST00000261889 TSR3Q9UJK0 312 aaKnown RBP13.22□□□□□ -0.29
SNX1-201ENST00000261889 BARX2Q9UMQ3 279 aaPredicted RBP13.22□□□□□ -0.29
SNX1-201ENST00000261889 A0A0C4DFX4 3053 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms