RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 APOPT1Q96IL0 206 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 KCNK16Q96T55 309 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 BAZ2BQ9UIF8 2168 aaKnown RBP13.9□□□□□ -0.18
LDLR-201ENST00000252444 C5orf60A6NFR6 353 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 NRP1O14786 923 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 ANGPT2O15123 496 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 GPR32O75388 356 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 CLDN10P78369 228 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 COL9A3Q14050 684 aaPredicted RBP13.9□□□□□ -0.18
LDLR-201ENST00000252444 SLC39A5Q6ZMH5 540 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 PARP9Q8IXQ6 854 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 FBXW11Q9UKB1 542 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 PCDHB1Q9Y5F3 818 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 DUSP10Q9Y6W6 482 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 QSER1Q2KHR3 1735 aa13.9□□□□□ -0.18
LDLR-201ENST00000252444 A0A088AWK7 358 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 PAGE1O75459 146 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 CCNDBP1O95273 360 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 CHN1P15882 459 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 ZNF10P21506 573 aaPredicted RBP13.89□□□□□ -0.19
LDLR-201ENST00000252444 CXCR2P25025 360 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 ATP6V0D1P61421 351 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 FAM26DQ5JW98 314 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 BEND6Q5SZJ8 279 aaPredicted RBP13.89□□□□□ -0.19
LDLR-201ENST00000252444 TXNDC11Q6PKC3 985 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 DDIASQ8IXT1 998 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 TCAIMQ8N3R3 496 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 MPP5Q8N3R9 675 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 DQX1Q8TE96 717 aaKnown RBP13.89□□□□□ -0.19
LDLR-201ENST00000252444 AENQ8WTP8 325 aaKnown RBP13.89□□□□□ -0.19
LDLR-201ENST00000252444 PCED1BQ96HM7 432 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 RMND5AQ9H871 391 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 IARS2Q9NSE4 1012 aaKnown RBP13.89□□□□□ -0.19
LDLR-201ENST00000252444 FETUBQ9UGM5 382 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 KIAA1551Q9HCM1 1747 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 CCDC85CA6NKD9 419 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 SOBPA7XYQ1 873 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 SERPINB5P36952 375 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 CAMK2GQ13555 558 aaPredicted RBP13.89□□□□□ -0.19
LDLR-201ENST00000252444 PLPP4Q5VZY2 271 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 SCML4Q8N228 414 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 RTL3Q8N8U3 475 aaKnown RBP13.89□□□□□ -0.19
LDLR-201ENST00000252444 TCF25Q9BQ70 676 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 GYG2O15488 501 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 MTHFRP42898 656 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 CERS6Q6ZMG9 384 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 ZNF572Q7Z3I7 529 aaPredicted RBP13.89□□□□□ -0.19
LDLR-201ENST00000252444 TMC3Q7Z5M5 1100 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 ATG4AQ8WYN0 398 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 TMEM159Q96B96 161 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 FCRL2Q96LA5 508 aaPredicted RBP13.89□□□□□ -0.19
LDLR-201ENST00000252444 QRFPRQ96P65 431 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 STRA6Q9BX79 667 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 ERVW-1Q9UQF0 538 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 WDR91A4D1P6 747 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 GNGT2O14610 69 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 GCATO75600 419 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 HOXB6P17509 224 aaKnown RBP13.89□□□□□ -0.19
LDLR-201ENST00000252444 IRX1P78414 480 aaPredicted RBP13.89□□□□□ -0.19
LDLR-201ENST00000252444 GPM6BQ13491 265 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 LRRC8BQ6P9F7 803 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 FBXL19Q6PCT2 694 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 GPR65Q8IYL9 337 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 SLC7A5P2Q9GIP4 190 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 FZD10Q9ULW2 581 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 GABRQQ9UN88 632 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 NR2E1Q9Y466 385 aa13.89□□□□□ -0.19
LDLR-201ENST00000252444 TMEM120BA0PK00 339 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 PRPF4O43172 522 aaKnown RBP eCLIP13.88□□□□□ -0.19
LDLR-201ENST00000252444 HNRNPRO43390 633 aaKnown RBP13.88□□□□□ -0.19
LDLR-201ENST00000252444 ERCC2P18074 760 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 PBX3P40426 434 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 STX5Q13190 355 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 INPP5AQ14642 412 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 ZNF655Q8N720 491 aaPredicted RBP13.88□□□□□ -0.19
LDLR-201ENST00000252444 MCOLN3Q8TDD5 553 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 FGFBP2Q9BYJ0 223 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 GMIPQ9P107 970 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 AGO1Q9UL18 857 aaKnown RBP13.88□□□□□ -0.19
LDLR-201ENST00000252444 DIAPH2O60879 1101 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 CYP11A1P05108 521 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 HAPLN1P10915 354 aaPredicted RBP13.88□□□□□ -0.19
LDLR-201ENST00000252444 COL6A2P12110 1019 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 DENND1CQ8IV53 801 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 HDAC7Q8WUI4 952 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 SH3GL1Q99961 368 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 ZCWPW1Q9H0M4 648 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 NPC1O15118 1278 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 EPHB6O15197 1021 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 GUCY1B2O75343 617 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 DPYSL2Q16555 572 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 SOWAHAQ2M3V2 549 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 CENPTQ96BT3 561 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 SMOC2Q9H3U7 446 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 HAS3O00219 553 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 NUDT17P0C025 328 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 DUSP4Q13115 394 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 PRKAA1Q13131 559 aa13.88□□□□□ -0.19
LDLR-201ENST00000252444 GSPT2Q8IYD1 628 aaKnown RBP13.88□□□□□ -0.19
LDLR-201ENST00000252444 BEND7Q8N7W2 519 aaPredicted RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms