RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 MAPK15Q8TD08 544 aa19.08■□□□□ 0.65
CPSF3-201ENST00000238112 CCDC28BQ9BUN5 200 aa19.08■□□□□ 0.65
CPSF3-201ENST00000238112 MLPHQ9BV36 600 aaPredicted RBP19.08■□□□□ 0.65
CPSF3-201ENST00000238112 CHRAC1Q9NRG0 131 aa19.08■□□□□ 0.65
CPSF3-201ENST00000238112 TLK1Q9UKI8 766 aa19.08■□□□□ 0.65
CPSF3-201ENST00000238112 SLC39A10Q9ULF5 831 aa19.08■□□□□ 0.65
CPSF3-201ENST00000238112 SSX2IPQ9Y2D8 614 aa19.08■□□□□ 0.65
CPSF3-201ENST00000238112 PALM2-AKAP2B1ALY0 433 aaPredicted RBP19.08■□□□□ 0.64
CPSF3-201ENST00000238112 LTFP02788 710 aa19.08■□□□□ 0.64
CPSF3-201ENST00000238112 RAG1P15918 1043 aa19.08■□□□□ 0.64
CPSF3-201ENST00000238112 NFKB1P19838 968 aa19.08■□□□□ 0.64
CPSF3-201ENST00000238112 CD68P34810 354 aaPredicted RBP19.08■□□□□ 0.64
CPSF3-201ENST00000238112 HCAR3P49019 387 aa19.08■□□□□ 0.64
CPSF3-201ENST00000238112 MTTPP55157 894 aa19.08■□□□□ 0.64
CPSF3-201ENST00000238112 ZBTB17Q13105 803 aa19.08■□□□□ 0.64
CPSF3-201ENST00000238112 SEMA3BQ13214 749 aa19.08■□□□□ 0.64
CPSF3-201ENST00000238112 TMEM40Q8WWA1 233 aa19.08■□□□□ 0.64
CPSF3-201ENST00000238112 DNAJB3Q8WWF6 145 aa19.08■□□□□ 0.64
CPSF3-201ENST00000238112 HDAC11Q96DB2 347 aa19.08■□□□□ 0.64
CPSF3-201ENST00000238112 OR52B2Q96RD2 323 aa19.08■□□□□ 0.64
CPSF3-201ENST00000238112 SH3GL3Q99963 347 aa19.08■□□□□ 0.64
CPSF3-201ENST00000238112 GATA5Q9BWX5 397 aaPredicted RBP19.08■□□□□ 0.64
CPSF3-201ENST00000238112 TASP1Q9H6P5 420 aa19.08■□□□□ 0.64
CPSF3-201ENST00000238112 WDR6Q9NNW5 1121 aaKnown RBP19.08■□□□□ 0.64
CPSF3-201ENST00000238112 ANLNQ9NQW6 1124 aa19.08■□□□□ 0.64
CPSF3-201ENST00000238112 OXSMQ9NWU1 459 aa19.08■□□□□ 0.64
CPSF3-201ENST00000238112 FBXW11Q9UKB1 542 aa19.08■□□□□ 0.64
CPSF3-201ENST00000238112 YJEFN3A6XGL0 299 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 RNASEH1O60930 286 aaKnown RBP19.07■□□□□ 0.64
CPSF3-201ENST00000238112 FYNP06241 537 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 NCAM1P13591 858 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 PEX2P28328 305 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 SERPINB5P36952 375 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 HADHAP40939 763 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 MED21Q13503 144 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 SNX17Q15036 470 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 TRIP10Q15642 601 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 ANO4Q32M45 955 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 SFT2D3Q587I9 215 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 INTS6LQ5JSJ4 861 aaKnown RBP19.07■□□□□ 0.64
CPSF3-201ENST00000238112 GALNT15Q8N3T1 639 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 LENG8Q96PV6 779 aaPredicted RBP19.07■□□□□ 0.64
CPSF3-201ENST00000238112 ACE2Q9BYF1 805 aaPredicted RBP19.07■□□□□ 0.64
CPSF3-201ENST00000238112 DDIT4Q9NX09 232 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 GOLGA8QA0A0J9YX86 632 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 GOLGA8OA6NCC3 632 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 GOLGA8NF8WBI6 632 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 THRAP10827 490 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 TPH1P17752 444 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 GLDCP23378 1020 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 DAOAP59103 153 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 VAT1Q99536 393 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 SGIP1Q9BQI5 828 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 ABHD16BQ9H3Z7 469 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 NSMCE4AQ9NXX6 385 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 IPPQ9Y573 584 aa19.07■□□□□ 0.64
CPSF3-201ENST00000238112 GOLGA8TH3BQL2 631 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 UQCRBP14927 111 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 SAT1P21673 171 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 MPSTP25325 297 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 RABGGTBP53611 331 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 POLE2P56282 527 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 ROR2Q01974 943 aaKnown RBP19.06■□□□□ 0.64
CPSF3-201ENST00000238112 PRPSAP1Q14558 356 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 UBXN11Q5T124 520 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 MAP3K21Q5TCX8 1036 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 SEL1L3Q68CR1 1132 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 IQSEC1Q6DN90 963 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 ST13P4Q8IZP2 240 aaPredicted RBP19.06■□□□□ 0.64
CPSF3-201ENST00000238112 ACVR1CQ8NER5 493 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 RDH11Q8TC12 318 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 MAML3Q96JK9 1138 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 UBP1Q9NZI7 540 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 ANKRD6Q9Y2G4 727 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 RAP2CQ9Y3L5 183 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 ZNF638Q14966 1978 aaKnown RBP19.06■□□□□ 0.64
CPSF3-201ENST00000238112 I6L893 689 aaPredicted RBP19.06■□□□□ 0.64
CPSF3-201ENST00000238112 NEMP1O14524 444 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 AIM2O14862 343 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 HDAC3O15379 428 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 AP1G2O75843 785 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 CHRNGP07510 517 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 YY1P25490 414 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 NUMBP49757 651 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 NUDT2P50583 147 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 AQP4P55087 323 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 GALNT2Q10471 571 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 CDH17Q12864 832 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 PPP2R5DQ14738 602 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 LIPMQ5VYY2 423 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 NAPEPLDQ6IQ20 393 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 ZYG11AQ6WRX3 759 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 EP400NLQ6ZTU2 488 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 SCYL1Q96KG9 808 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 PPP1R36Q96LQ0 422 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 SERPINI1Q99574 410 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 EPAS1Q99814 870 aa19.06■□□□□ 0.64
CPSF3-201ENST00000238112 PLXNB2O15031 1838 aa19.05■□□□□ 0.64
CPSF3-201ENST00000238112 MBLAC1A4D2B0 266 aaPredicted RBP19.05■□□□□ 0.64
CPSF3-201ENST00000238112 C9IYK1 514 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms