RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 RARS2Q5T160 578 aaKnown RBP12.64□□□□□ -0.39
NUP88-201ENST00000225696 FAM72AQ5TYM5 149 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 IL23RQ5VWK5 629 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 METTL21CQ5VZV1 264 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 NXNQ6DKJ4 435 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 FAM72DQ6L9T8 149 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 SLC26A9Q7LBE3 791 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 PLPPR4Q7Z2D5 763 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 FAM72BQ86X60 149 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 LSMEM2Q8N112 164 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 KLRG1Q96E93 195 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 CNDP1Q96KN2 507 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 MRPL1Q9BYD6 325 aaKnown RBP12.64□□□□□ -0.39
NUP88-201ENST00000225696 ILKAPQ9H0C8 392 aaPredicted RBP12.64□□□□□ -0.39
NUP88-201ENST00000225696 WDR41Q9HAD4 459 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 EIF2B3Q9NR50 452 aaKnown RBP12.64□□□□□ -0.39
NUP88-201ENST00000225696 SLC39A10Q9ULF5 831 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 FZD10Q9ULW2 581 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 RAB26Q9ULW5 256 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 TMCO1Q9UM00 188 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 RNF11Q9Y3C5 154 aa12.64□□□□□ -0.39
NUP88-201ENST00000225696 I6L893 689 aaPredicted RBP12.63□□□□□ -0.39
NUP88-201ENST00000225696 HDAC3O15379 428 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 CSPG5O95196 566 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 INSRRP14616 1297 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 RPL10P27635 214 aaKnown RBP12.63□□□□□ -0.39
NUP88-201ENST00000225696 SPRP35270 261 aaPredicted RBP12.63□□□□□ -0.39
NUP88-201ENST00000225696 ARL4AP40617 200 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 RPL14P50914 215 aaKnown RBP12.63□□□□□ -0.39
NUP88-201ENST00000225696 HPCAP84074 193 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 NSUN2Q08J23 767 aaKnown RBP eCLIP12.63□□□□□ -0.39
NUP88-201ENST00000225696 DCAF15Q66K64 600 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 TMEM135Q86UB9 458 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 DEFB106AQ8N104 65 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 AHI1Q8N157 1196 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 SNX31Q8N9S9 440 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.63□□□□□ -0.39
NUP88-201ENST00000225696 RNF169Q8NCN4 708 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 RNF139Q8WU17 664 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 ATP6V1E2Q96A05 226 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 TMA16Q96EY4 203 aaKnown RBP12.63□□□□□ -0.39
NUP88-201ENST00000225696 ACE2Q9BYF1 805 aaPredicted RBP12.63□□□□□ -0.39
NUP88-201ENST00000225696 PCDHAC1Q9H158 963 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 VPS33BQ9H267 617 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 ZNF696Q9H7X3 374 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 ANLNQ9NQW6 1124 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 UBP1Q9NZI7 540 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 NDUFA13Q9P0J0 144 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 PRPF19Q9UMS4 504 aaKnown RBP12.63□□□□□ -0.39
NUP88-201ENST00000225696 GJA3Q9Y6H8 435 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 NUP205Q92621 2012 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 TCAF2A6NFQ2 919 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 TNFAIP8O95379 198 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 FAM200BP0CF97 657 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 ZNF26P17031 533 aaPredicted RBP12.63□□□□□ -0.39
NUP88-201ENST00000225696 HDCP19113 662 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 FGFR3P22607 806 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 GARSP41250 739 aaKnown RBP12.63□□□□□ -0.39
NUP88-201ENST00000225696 IFRD2Q12894 506 aaPredicted RBP12.63□□□□□ -0.39
NUP88-201ENST00000225696 NAB1Q13506 487 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 GRM3Q14832 879 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 CYTH1Q15438 398 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 SPANXN3Q5MJ09 141 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 SEL1L3Q68CR1 1132 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 C16orf89Q6UX73 402 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 RP9Q8TA86 221 aaKnown RBP12.63□□□□□ -0.39
NUP88-201ENST00000225696 SLC7A14Q8TBB6 771 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 MCMBPQ9BTE3 642 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 C1QTNF1Q9BXJ1 281 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 MRPS26Q9BYN8 205 aaKnown RBP12.63□□□□□ -0.39
NUP88-201ENST00000225696 SLC2A11Q9BYW1 496 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 TASP1Q9H6P5 420 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 IARS2Q9NSE4 1012 aaKnown RBP12.63□□□□□ -0.39
NUP88-201ENST00000225696 RHBDL2Q9NX52 303 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 VANGL2Q9ULK5 521 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 AKT3Q9Y243 479 aa12.63□□□□□ -0.39
NUP88-201ENST00000225696 SSC5DA1L4H1 1573 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 HACD1B0YJ81 288 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 TMEM114B3SHH9 223 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 TMCC1O94876 653 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 FAM58BPP0C7Q3 252 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 CD68P34810 354 aaPredicted RBP12.62□□□□□ -0.39
NUP88-201ENST00000225696 PPARGP37231 505 aaPredicted RBP12.62□□□□□ -0.39
NUP88-201ENST00000225696 GLUD2P49448 558 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 NDUFV1P49821 464 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 DCAF6Q58WW2 860 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 SYPL2Q5VXT5 272 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 ZNF410Q86VK4 478 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 LCA5Q86VQ0 697 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 PCDH20Q8N6Y1 951 aaKnown RBP12.62□□□□□ -0.39
NUP88-201ENST00000225696 DNAAF3Q8N9W5 541 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 FAM110BQ8TC76 370 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 PDCD6IPQ8WUM4 868 aaKnown RBP12.62□□□□□ -0.39
NUP88-201ENST00000225696 KCTD4Q8WVF5 259 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 FAM149B1Q96BN6 582 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 VPS39Q96JC1 886 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 OMDQ99983 421 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 MLPHQ9BV36 600 aaPredicted RBP12.62□□□□□ -0.39
NUP88-201ENST00000225696 DRC3Q9H069 523 aa12.62□□□□□ -0.39
NUP88-201ENST00000225696 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms