RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 TTC13Q8NBP0 860 aa27.85■■■□□ 2.05
CHMP4B-201ENST00000217402 MAIP1Q8WWC4 291 aa27.85■■■□□ 2.05
CHMP4B-201ENST00000217402 LGMNQ99538 433 aa27.85■■■□□ 2.05
CHMP4B-201ENST00000217402 AP1M1Q9BXS5 423 aa27.85■■■□□ 2.05
CHMP4B-201ENST00000217402 SP110Q9HB58 689 aa27.85■■■□□ 2.05
CHMP4B-201ENST00000217402 IPO11Q9UI26 975 aaKnown RBP27.85■■■□□ 2.05
CHMP4B-201ENST00000217402 NDRG2Q9UN36 371 aaKnown RBP27.85■■■□□ 2.05
CHMP4B-201ENST00000217402 RAD54BQ9Y620 910 aa27.85■■■□□ 2.05
CHMP4B-201ENST00000217402 NYNRINQ9P2P1 1898 aaKnown RBP27.85■■■□□ 2.05
CHMP4B-201ENST00000217402 NUP205Q92621 2012 aa27.85■■■□□ 2.05
CHMP4B-201ENST00000217402 J3KR12 359 aa27.85■■■□□ 2.05
CHMP4B-201ENST00000217402 GRSF1Q12849 480 aaKnown RBP eCLIP27.85■■■□□ 2.05
CHMP4B-201ENST00000217402 PDK1Q15118 436 aa27.85■■■□□ 2.05
CHMP4B-201ENST00000217402 FSTL4Q6MZW2 842 aa27.85■■■□□ 2.05
CHMP4B-201ENST00000217402 LINGO4Q6UY18 593 aa27.85■■■□□ 2.05
CHMP4B-201ENST00000217402 CYB5D2Q8WUJ1 264 aa27.85■■■□□ 2.05
CHMP4B-201ENST00000217402 C1orf54Q8WWF1 131 aa27.85■■■□□ 2.05
CHMP4B-201ENST00000217402 F5P12259 2224 aa27.84■■■□□ 2.05
CHMP4B-201ENST00000217402 MAN2B1O00754 1011 aa27.84■■■□□ 2.05
CHMP4B-201ENST00000217402 PPP1R12AO14974 1030 aaPredicted RBP27.84■■■□□ 2.05
CHMP4B-201ENST00000217402 MCF2LO15068 1137 aa27.84■■■□□ 2.05
CHMP4B-201ENST00000217402 KDELR3O43731 214 aa27.84■■■□□ 2.05
CHMP4B-201ENST00000217402 EGFP01133 1207 aa27.84■■■□□ 2.05
CHMP4B-201ENST00000217402 EIF3EP60228 445 aaKnown RBP27.84■■■□□ 2.05
CHMP4B-201ENST00000217402 ZXDAP98168 799 aa27.84■■■□□ 2.05
CHMP4B-201ENST00000217402 DNTTIP2Q5QJE6 756 aaKnown RBP27.84■■■□□ 2.05
CHMP4B-201ENST00000217402 ZNF852Q6ZMS4 543 aa27.84■■■□□ 2.05
CHMP4B-201ENST00000217402 NUDT18Q6ZVK8 323 aa27.84■■■□□ 2.05
CHMP4B-201ENST00000217402 EZH1Q92800 747 aaPredicted RBP27.84■■■□□ 2.05
CHMP4B-201ENST00000217402 ELOVL2Q9NXB9 296 aa27.84■■■□□ 2.05
CHMP4B-201ENST00000217402 ACTL7AQ9Y615 435 aa27.84■■■□□ 2.05
CHMP4B-201ENST00000217402 ANTXRLA6NF34 631 aa27.83■■■□□ 2.05
CHMP4B-201ENST00000217402 H7C0C1 242 aa27.83■■■□□ 2.05
CHMP4B-201ENST00000217402 NCAM2O15394 837 aa27.83■■■□□ 2.05
CHMP4B-201ENST00000217402 ZMPSTE24O75844 475 aa27.83■■■□□ 2.05
CHMP4B-201ENST00000217402 ATP5OP48047 213 aa27.83■■■□□ 2.05
CHMP4B-201ENST00000217402 ARF5P84085 180 aa27.83■■■□□ 2.05
CHMP4B-201ENST00000217402 TTC17Q96AE7 1141 aa27.83■■■□□ 2.05
CHMP4B-201ENST00000217402 HDAC11Q96DB2 347 aa27.83■■■□□ 2.05
CHMP4B-201ENST00000217402 CHD5Q8TDI0 1954 aa27.83■■■□□ 2.05
CHMP4B-201ENST00000217402 PDE2AO00408 941 aaPredicted RBP27.82■■■□□ 2.04
CHMP4B-201ENST00000217402 KRIT1O00522 736 aa27.82■■■□□ 2.04
CHMP4B-201ENST00000217402 MAFKO60675 156 aa27.82■■■□□ 2.04
CHMP4B-201ENST00000217402 PAFAH1B1P43034 410 aa27.82■■■□□ 2.04
CHMP4B-201ENST00000217402 STK19P49842 368 aaPredicted RBP27.82■■■□□ 2.04
CHMP4B-201ENST00000217402 SEC13P55735 322 aa27.82■■■□□ 2.04
CHMP4B-201ENST00000217402 ECT2LQ008S8 904 aa27.82■■■□□ 2.04
CHMP4B-201ENST00000217402 AP1B1Q10567 949 aa27.82■■■□□ 2.04
CHMP4B-201ENST00000217402 EIF4HQ15056 248 aaKnown RBP27.82■■■□□ 2.04
CHMP4B-201ENST00000217402 ACDQ96AP0 544 aa27.82■■■□□ 2.04
CHMP4B-201ENST00000217402 RPL10LQ96L21 214 aaKnown RBP27.82■■■□□ 2.04
CHMP4B-201ENST00000217402 C10orf88Q9H8K7 445 aa27.82■■■□□ 2.04
CHMP4B-201ENST00000217402 TRIOO75962 3097 aa27.82■■■□□ 2.04
CHMP4B-201ENST00000217402 K7EQS6 105 aa27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 PRAMEF11O60813 436 aa27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 ATP5BP06576 529 aaKnown RBP27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 DRD1P21728 446 aa27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 SULT2A1Q06520 285 aa27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 PPIDQ08752 370 aaKnown RBP27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 SNX1Q13596 522 aa27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 TFB1MQ8WVM0 346 aaKnown RBP27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 SHDQ96IW2 340 aa27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 ZDHHC4Q9NPG8 344 aa27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 SLC25A13Q9UJS0 675 aa27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 CDC23Q9UJX2 597 aa27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 RBP3P10745 1247 aa27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 IL10RBQ08334 325 aa27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 RETSATQ6NUM9 610 aa27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 LRRC49Q8IUZ0 686 aa27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 PRELID2Q8N945 189 aa27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 QKIQ96PU8 341 aaKnown RBP eCLIP27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 PDFQ9HBH1 243 aa27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 RNF14Q9UBS8 474 aa27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 DNPEPQ9ULA0 475 aa27.81■■■□□ 2.04
CHMP4B-201ENST00000217402 A0A0A0MRY4 1105 aa27.8■■■□□ 2.04
CHMP4B-201ENST00000217402 LIASO43766 372 aa27.8■■■□□ 2.04
CHMP4B-201ENST00000217402 MT-CO1P00395 513 aa27.8■■■□□ 2.04
CHMP4B-201ENST00000217402 DLDP09622 509 aaKnown RBP27.8■■■□□ 2.04
CHMP4B-201ENST00000217402 TNFRSF4P43489 277 aa27.8■■■□□ 2.04
CHMP4B-201ENST00000217402 EMC10Q5UCC4 262 aa27.8■■■□□ 2.04
CHMP4B-201ENST00000217402 CCDC13Q8IYE1 715 aa27.8■■■□□ 2.04
CHMP4B-201ENST00000217402 SLC35B2Q8TB61 432 aa27.8■■■□□ 2.04
CHMP4B-201ENST00000217402 UCMAQ8WVF2 138 aa27.8■■■□□ 2.04
CHMP4B-201ENST00000217402 ERVW-1Q9UQF0 538 aa27.8■■■□□ 2.04
CHMP4B-201ENST00000217402 GOLGA6L10A0A0M3HER8 536 aa27.79■■■□□ 2.04
CHMP4B-201ENST00000217402 DCXO43602 365 aa27.79■■■□□ 2.04
CHMP4B-201ENST00000217402 TIMM44O43615 452 aa27.79■■■□□ 2.04
CHMP4B-201ENST00000217402 ASLP04424 464 aa27.79■■■□□ 2.04
CHMP4B-201ENST00000217402 VAV1P15498 845 aa27.79■■■□□ 2.04
CHMP4B-201ENST00000217402 STARD6P59095 220 aa27.79■■■□□ 2.04
CHMP4B-201ENST00000217402 XRCC4Q13426 336 aa27.79■■■□□ 2.04
CHMP4B-201ENST00000217402 UBXN2BQ14CS0 331 aa27.79■■■□□ 2.04
CHMP4B-201ENST00000217402 PRKD1Q15139 912 aaPredicted RBP27.79■■■□□ 2.04
CHMP4B-201ENST00000217402 PTPRNQ16849 979 aa27.79■■■□□ 2.04
CHMP4B-201ENST00000217402 SLC45A4Q5BKX6 768 aa27.79■■■□□ 2.04
CHMP4B-201ENST00000217402 EGFLAMQ63HQ2 1017 aa27.79■■■□□ 2.04
CHMP4B-201ENST00000217402 DARS2Q6PI48 645 aaKnown RBP27.79■■■□□ 2.04
CHMP4B-201ENST00000217402 CDKL3Q8IVW4 592 aaPredicted RBP27.79■■■□□ 2.04
CHMP4B-201ENST00000217402 TSGA13Q96PP4 275 aa27.79■■■□□ 2.04
CHMP4B-201ENST00000217402 FOXQ1Q9C009 403 aa27.79■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms